Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0276.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   5.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.4  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   5.4  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 597 FGSSCHSGRLCLSWMQWLRWVLK 529
           FG+ C SGR+      W +W +K
Sbjct: 92  FGNMCRSGRMFAPTKTWRKWHVK 114


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
 Frame = +3

Query: 240 QRRPEQ-IFSKRNIDPEQIKEI------NNYYDIETTVTVEFDTGQAYRDFVAGPYFRNR 398
           Q RP++ I  K  I  + I+ I      ++ ++     T  +D  +  R+ +AG YF+N 
Sbjct: 551 QVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVEREIIAGDYFKNG 610

Query: 399 IE--DQITESY 425
           +E   +I +SY
Sbjct: 611 LEGAPKILKSY 621


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 597 FGSSCHSGRLCLSWMQWLRWVLK 529
           FG+ C SGR+      W +W +K
Sbjct: 92  FGNMCRSGRMFAPTKTWRKWHVK 114


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 609 FSCYFGSSCHSG-RLCLSWM 553
           FSCYFGS  HS   LC  ++
Sbjct: 108 FSCYFGSDGHSNDTLCQQYI 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,670
Number of Sequences: 5004
Number of extensions: 56012
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)