Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0276.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0446 - 5815231-5816202                                           30   2.5  
03_02_0342 - 7645323-7645909,7646323-7646491                           29   4.3  
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    29   5.7  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   7.5  
02_02_0298 - 8713660-8714073                                           28   7.5  
09_01_0032 - 541411-541737,542751-543752                               28   9.9  

>04_01_0446 - 5815231-5816202
          Length = 323

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 642 GSVPCLGCCLRFSCYFGSSCHSGRLCLSWMQWLRWVLKTEL 520
           G VP L C +R S    SS  SGR   + +   RW + T L
Sbjct: 52  GGVPSLACIIRLSSSSSSSSLSGRSTSALLPPARWGIGTAL 92


>03_02_0342 - 7645323-7645909,7646323-7646491
          Length = 251

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 756 GXRLLRRFVAPALGRLVNCP*RPVTFFSNVAPASLVELGSVPCLGC 619
           G RL+ R  A  LG  V      V+F +  APA LV +GS+ CL C
Sbjct: 2   GTRLVPRETAALLGAFVAL--LAVSFGAVAAPAPLV-VGSIKCLDC 44


>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
            10606664-10608382,10609848-10610791
          Length = 1091

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 258  IFSKRNIDPEQIKEINNYYDIETTVTVEF 344
            +F K N+D ++++ + ++YDIE  V   F
Sbjct: 1029 VFIKVNVDSDELESVTDWYDIEGIVPTFF 1057


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 384 YFRNRIEDQITESYRPTRSPATTVPSAYDDPDPQLYFRQGKRTTSQAPSLKPXXXXXXXX 563
           Y +NRI D+  E Y   R+  T+  +   D +  ++  + K++ S   S++         
Sbjct: 198 YEKNRIVDEEEEGYPTMRNILTSRWADAGDEEENVFVPKKKKSVSPVDSIERGSTKKVTS 257

Query: 564 XXSGR--CDNCFRSSS*SGDN 620
             SG     N  RSSS S D+
Sbjct: 258 PESGEVLVYNSVRSSSRSSDS 278


>02_02_0298 - 8713660-8714073
          Length = 137

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 383 LLQKQNRRSNNGKLQTDPFSGDHCAEC 463
           +LQ+  R+ N G L T   +GD CA C
Sbjct: 77  VLQEMARKRNRGLLTTAAAAGDACAAC 103


>09_01_0032 - 541411-541737,542751-543752
          Length = 442

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 576 RCDNCFRSSS*SGDNTLNKERTLIQLKKRVQRSKRRLQAS 695
           RC++C +    + D   NKE T   ++ R QR++R  + S
Sbjct: 403 RCEDCLQYGHRTRDCKNNKEGTSSSMEPRKQRARRNRRGS 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,155,308
Number of Sequences: 37544
Number of extensions: 373027
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)