Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0276.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.15 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.15 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 297  EINNYYDIETTVTVEFDTGQAYRDFVAGPYFRNRIEDQITES----YRPTRSPATTVPSA 464
            ++  + + +  VT     G+     VA     NR+  +IT       RP R  AT   +A
Sbjct: 1278 DLQQHVEYQFWVTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNA 1337

Query: 465  YDDPDPQLYFRQGKR 509
              DP  + Y  QG++
Sbjct: 1338 VGDPTREWYKGQGEQ 1352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 297  EINNYYDIETTVTVEFDTGQAYRDFVAGPYFRNRIEDQITES----YRPTRSPATTVPSA 464
            ++  + + +  VT     G+     VA     NR+  +IT       RP R  AT   +A
Sbjct: 1274 DLQQHVEYQFWVTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNA 1333

Query: 465  YDDPDPQLYFRQGKR 509
              DP  + Y  QG++
Sbjct: 1334 VGDPTREWYKGQGEQ 1348


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 740 EGLLPPLWEG 711
           EGLLPP+W G
Sbjct: 221 EGLLPPVWVG 230


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 787 KGFVTXLSKEGXPAFKKVCCPRFGKVGEL 701
           K FVT L  +G P+   V   + GK G L
Sbjct: 76  KTFVTILRYDGVPSTLNVISGKTGKGGRL 104


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -2

Query: 790 WKG--FVTXLSKEGXPAFKKVCCPRFGKVGEL 701
           W G  FVT L  +G P+   V   + G  G L
Sbjct: 73  WNGKTFVTILRNDGVPSSLNVISNKIGNGGPL 104


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 726 PALGRLVNCP*RPVTFFSNVAPASL 652
           P  G     P  P +FFS+V+P SL
Sbjct: 84  PGGGSSSPSPSSPSSFFSSVSPTSL 108


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 386 VRSGNKVSVCLSRIKFHCNSGLDV 315
           + SGNK+S+  S+     NS  +V
Sbjct: 550 INSGNKISLATSKSFIKANSQTEV 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,626
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)