Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0275.Seq
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    32   0.090
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    32   0.12 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.21 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.6  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    27   3.4  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   3.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   4.5  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   5.9  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   5.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   7.8  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   7.8  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -1

Query: 458 TRATADSDIDDVCPVSD-NGVIGRIRQV-IVSVIPFLAWGGRARKVIVV 318
           T+A  DSD  DVC + +  G  G+++QV ++ V+  L  G    KVIV+
Sbjct: 112 TKAKGDSDPLDVCEIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVI 160


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +3

Query: 561 ASGNPKGGCLSGPRGDVGT-GETPNSGEVPLGLVGQSLKGLKPIRLTNGAPKGQEALTGL 737
           A+GN   G    PR   G  G  P +   P GL+G S     PI     A  G +A    
Sbjct: 320 AAGNNTNGRPVAPRPSAGAGGANPPAASQP-GLLGGSSNSAGPIAAATAAGVGADASDAA 378

Query: 738 RKGGGF 755
             GG F
Sbjct: 379 NTGGSF 384


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 751  PPPLRKPVKASCPLGAPFVNRIGFNPLRDWPTNPRGTSPEFGVSPVPTSPLGPERQPPLG 572
            PP +  P+  S  L +P       +P     + P  TSP   ++ VP  P    + PP+ 
Sbjct: 966  PPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVP 1025

Query: 571  FPLAESP 551
             P A++P
Sbjct: 1026 LPSADAP 1032



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -2

Query: 763  IQGNPPPLRKPVKASCPLGAPFVNRIGFNPL-RDWPTNPRGTSPEFGVSPVPTSPLG-PE 590
            +    PP+ KP  A+ P+ AP     G  P+ +     P   +P  G+ PVP    G P 
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPS----GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 589  RQPPLGFPLAESP 551
              PP   P    P
Sbjct: 1191 VPPPSEAPPVPKP 1203


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 657  VGQSLKGLKPIRLTNGAPKGQEALTGLRKGGGFPWIPSRKRWVLQR 794
            +GQ ++GLK    T G+  G  +L+ + KGG     PSR+   L+R
Sbjct: 1319 LGQGIRGLKSG--TQGS-HGPTSLSSMLKGGSVSRTPSRQNSALRR 1361


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 255 QPVPQPNVAGMAPSN-LVPCVSNYDDLSCP 341
           +P P PNVAG++ +N   P   N D+ S P
Sbjct: 205 RPPPTPNVAGLSLNNFFCPLPENKDNKSSP 234


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 491 RPETATIPSRPGPENLAN 544
           RP  A IP++P P+NL N
Sbjct: 164 RPPDAVIPNKPHPQNLKN 181


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -2

Query: 709 GAPFVNRIGFNPLRDWPTNPR-GTSPEFGVSPVPTSPLGPERQPPLGFP 566
           G P  +     P    P+ P  G  P   + P+P  P  P  QPP   P
Sbjct: 139 GPPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +3

Query: 489 PDQRPQQSHHAQARRTWPMNQGLSASGNPKGGCLSGPRGDVGTGETPNSGEVPLGLVGQS 668
           P Q+PQQ  H Q ++  P  Q L      +    SG +  V T  + N     +  V   
Sbjct: 174 PQQQPQQQQHQQPQQPQPPQQPLQQQQQQR-QLHSGIQQPVSTIVSQNGTYYSIPAVNHP 232

Query: 669 LKGLKPIRLTNGAPKGQEAL 728
           + G +PI +       Q AL
Sbjct: 233 MAG-QPIAIAPVPAPNQAAL 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -2

Query: 751 PPPL--RKPVKASCPLGAPFVNRIGFNPLRDWPTNPRGTSPEFGVSPVPTSPLGPERQPP 578
           PPP    +   A  PLG    +R    P+   P+ P    P    S  P+ P+G    PP
Sbjct: 391 PPPAIPGRSAPALPPLGN--ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 577 L 575
           L
Sbjct: 449 L 449


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 602  PWSGKATPFRVPASRKPLVHWPGSPGLGV-MGLLRSLVGSQTA 477
            PW+GKA+     +    L  W G  G+GV + LL++L     A
Sbjct: 2237 PWAGKASALLTKSVWLLLALWDGIQGVGVGVMLLQTLARDHVA 2279


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 417 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPQQSHHAQARRTWPMNQGL-SASGNPKGGCLS 593
           G N+++  V   P   +  +  L P+Q PQ    +Q   +  + Q + SA+G P+   L 
Sbjct: 111 GDNMLESVVSVSPTQMHPSLQGLPPNQHPQMPPSSQQPNSDDVQQHMFSAAGLPRS--LG 168

Query: 594 GP 599
           GP
Sbjct: 169 GP 170


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 434 IDDVCPVSDNGVIGRIRQVIVSVIPFLAWGGRARKVIVVR 315
           +DDV  V+  G +  +  + V     L WGG  +  I+ R
Sbjct: 219 VDDVAGVALGGALKNVVAMAVGFADGLEWGGNTKAAIMRR 258


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 202  LESIIDLILTS*NHPTPFNRSRSLMSLVWLHRT 300
            L ++++L+ T   H  P NR R    L WLH T
Sbjct: 4022 LLNLLELLPTM-THTLPHNRFRLFFFLSWLHAT 4053


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
 Frame = +3

Query: 228 HLLESPDAIQPVPQPNVAGMAPSNLVPCVSNYDDLSCPTSPGQE-----GDY-------A 371
           H+ E PDAI     P++  +  + +V C ++Y   + P S   +      DY       A
Sbjct: 177 HVYE-PDAIVTTTDPSLPLLDSNAVVECFNSYQSEADPVSNASKALKHVNDYFNTSYAPA 235

Query: 372 NYYLTNSANNTIITDG 419
            YY + +A+  I+T G
Sbjct: 236 EYYGSQTASKVIVTFG 251


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +1

Query: 133 KMXKLLF-IGFLASACAQNMDTGG---LESIIDLILTS*NHPTPFNR---SRSLMSLVWL 291
           K  KLL   G L+S+  + +D       +S++  +L   + P P  R   +RSL   + L
Sbjct: 52  KAAKLLAESGKLSSSMVKRLDLSSSDKYDSMVQGVLDVKSLPDPLGRVTYARSLDDGLDL 111

Query: 292 HRTWCPASLTTMTFRALP 345
           ++  CP  L  + F A P
Sbjct: 112 YKVSCPVGLLLVIFEARP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,803,046
Number of Sequences: 5004
Number of extensions: 88339
Number of successful extensions: 270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)