Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0274.Seq
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.2  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.2  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70279-11|CAC42324.1|  571|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z70279-8|CAC42325.1|  533|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   6.6  
AY728060-1|AAU43721.1|  277|Caenorhabditis elegans cadmium-induc...    28   6.6  
AL023841-9|CAC42362.1|  571|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL023841-6|CAC42363.1|  533|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF233264-1|AAF63322.1|  571|Caenorhabditis elegans calcium/calmo...    28   6.6  
AF233263-1|AAF63321.1|  533|Caenorhabditis elegans calcium/calmo...    28   6.6  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   8.8  

>U58739-1|AAB00607.1|  392|Caenorhabditis elegans Hypothetical
           protein F28C10.3 protein.
          Length = 392

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -2

Query: 536 LQHFHIHKHLGYTSYGARNNETVAIRALDNSDVEGIQELTLIE-MHTRKTGSLVE-RFKV 363
           ++ F I KH+G  +YG    E  A+R L+  D E I  + ++E     K   +VE  +K+
Sbjct: 26  IEDFEILKHIGSGAYG----EVAAVRKLNGCDTETIYAMKVMEKRRMSKHKDMVEHEWKI 81

Query: 362 LSVI 351
           L+ I
Sbjct: 82  LTTI 85


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 282 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 416
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 282 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 416
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 500 TSYGARNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLSVIE 348
           TS+GARNN  ++ R+ +   +  +   +L   H+   G++ +  + LSVIE
Sbjct: 126 TSFGARNNYVLSSRSFNRGALRYVPRKSLTASHS--IGNVEQGTRELSVIE 174


>Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.12 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -3

Query: 274 KPVLYILEILQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 95
           K  +Y+ +  +  +C    P+  +   LC+ YNI ++ +V S + R    +  F ++   
Sbjct: 43  KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101

Query: 94  H 92
           H
Sbjct: 102 H 102


>Z70279-11|CAC42324.1|  571|Caenorhabditis elegans Hypothetical
           protein K11E8.1h protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>Z70279-8|CAC42325.1|  533|Caenorhabditis elegans Hypothetical
           protein K11E8.1e protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 530 HFHIHKHLGYTSYGARNNETVAIRALDNSDVEGI 429
           H H+H+  GY  Y    +   +I+ +D   ++G+
Sbjct: 170 HNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGM 203


>AY728060-1|AAU43721.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-6 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -3

Query: 274 KPVLYILEILQQLSC*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHP 95
           K  +Y+ +  +  +C    P+  +   LC+ YNI ++ +V S + R    +  F ++   
Sbjct: 43  KDTVYLYQFKRLKNCPNLSPFCMKIEILCRVYNIPYE-IVESSMARSRNGTLPFIELNGE 101

Query: 94  H 92
           H
Sbjct: 102 H 102


>AL023841-9|CAC42362.1|  571|Caenorhabditis elegans Hypothetical
           protein K11E8.1h protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>AL023841-6|CAC42363.1|  533|Caenorhabditis elegans Hypothetical
           protein K11E8.1e protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>AF233264-1|AAF63322.1|  571|Caenorhabditis elegans
           calcium/calmodulin-dependent proteinkinase II isoform D
           protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>AF233263-1|AAF63321.1|  533|Caenorhabditis elegans
           calcium/calmodulin-dependent proteinkinase II isoform C
           protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 529 CCKKFT*QRCKMASLILKPQLSMGISQGKRTTSXTKPIYSNGRLYHNGEPKAGHTS 696
           C KKF  +R K+ + I   ++   +S   RT+  T  + SNG   H+    AG +S
Sbjct: 287 CLKKFNARR-KLKAAISAVKMVTRMSGVLRTSDSTGSVASNGSTTHDASQVAGTSS 341


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 133 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 252
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,968
Number of Sequences: 27780
Number of extensions: 402759
Number of successful extensions: 1035
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)