Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0273.Seq
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   4.1  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    26   5.4  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.4  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   7.1  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 177 YGISRMDHCFWEKTFLA*SVARIILGCWMTFILLGISLLVFY 302
           YG+S  D   W    +A    R+ILG  MTF L   + L++Y
Sbjct: 450 YGVSNYDVFRWAS--VADGSRRLILGTMMTFFLFPGAPLIYY 489


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 497 RRFTQYTFNKLVQTRKTNVFEKNNRRSIQDFRLKYKSVNLTIMLLSKFMGDD 652
           +R+ Q    K+ + +  N+F KN +  + D RLK +      +  +K M D+
Sbjct: 348 KRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE 399


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 712 KGPSQSGRQPVGIRGWIN 765
           KGP+  G  P GIRG +N
Sbjct: 82  KGPTGKGHYPSGIRGLVN 99


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 712 KGPSQSGRQPVGIRGWIN 765
           KGP+  G  P GIRG +N
Sbjct: 82  KGPNGKGHYPSGIRGLVN 99


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 157 GPQAPLTTVSPGWTIASGRKHSWLN-RWPELFSA 255
           GPQ P T V   + I + +KH + N  WP L  A
Sbjct: 131 GPQNPRTIVGLNYVIDTLKKHVFNNLLWPSLDKA 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,608,292
Number of Sequences: 5004
Number of extensions: 79025
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)