Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0273.Seq
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0294 + 1968162-1968212,1969379-1969484,1969785-1969970,197... 31 0.80
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 31 1.1
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 31 1.1
06_01_0583 - 4174037-4174114,4174215-4174352,4174447-4174555,417... 30 2.4
05_03_0296 - 11875922-11876378,11876705-11877045 29 5.6
12_02_0287 - 16851369-16851998 28 9.8
12_02_0286 - 16845594-16846223 28 9.8
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 28 9.8
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781... 28 9.8
02_01_0414 - 3034037-3034330 28 9.8
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 28 9.8
>02_01_0294 +
1968162-1968212,1969379-1969484,1969785-1969970,
1970562-1971011,1971121-1971204,1971378-1971445
Length = 314
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -3
Query: 757 IPLCPPVAAQTERVLYGKTSNTMPGISFPNGTSIGVVAHKLT*EHDSKIYTFIFQSKILN 578
+P PP + Y S MP PNG+S G+V T D FI+ K+++
Sbjct: 100 VPSMPPTTNGSNMGTYTTPSTAMPDSLLPNGSSSGIV--NGTPSSDQ----FIYAGKVIH 153
Query: 577 GSP 569
G P
Sbjct: 154 GLP 156
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 248 NNSGHRLSQECFLPEAMVHPGDTVVSGA*GPTQESPPPAST 126
+ S S++ +P HP +SG PT PPP +T
Sbjct: 132 DGSAPSASEDLIVPSVQPHPVANPISGGSNPTSSPPPPNAT 172
>04_01_0568 -
7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 688 ASYLRFYRKGPSQSGRQPVGIRGWIN 765
ASY RF P+Q R PVG+ W++
Sbjct: 275 ASYARFVSNWPAQGSRYPVGVALWLS 300
>06_01_0583 -
4174037-4174114,4174215-4174352,4174447-4174555,
4174857-4174945,4175218-4175307,4175570-4175653,
4177508-4177759
Length = 279
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 112 YPLLKVDAGGGDSCVGPQAPLTTVSPGWTIASGRKH-SWLNR 234
Y LK D+GGG P P+ + G AS R+ WL +
Sbjct: 122 YTPLKEDSGGGSESATPPTPIEPIHDGKIRASSREQIKWLEQ 163
>05_03_0296 - 11875922-11876378,11876705-11877045
Length = 265
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 640 YGRRLQWRFHWEN*X---RASYLRFYRKGPSQSGRQPVGIRGW 759
+GRR WR W + R++ +RF +G S+ P +RGW
Sbjct: 48 HGRR--WRRFWTSAAGVLRSTAIRFLSRGGSRDYENPYPVRGW 88
>12_02_0287 - 16851369-16851998
Length = 209
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 130 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 237
DAGGGD G + + G GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196
>12_02_0286 - 16845594-16846223
Length = 209
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 130 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 237
DAGGGD G + + G GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 130 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 237
D GD C G A T GW ASGR S ++ W
Sbjct: 76 DGRCGDRCAGAGAAAGT---GWEWASGRASSTVSEW 108
>04_04_0848 -
28677545-28677635,28677760-28677887,28678020-28678126,
28678242-28678320,28678426-28678515,28678603-28678854,
28680351-28680497,28680711-28681035,28681177-28681406
Length = 482
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 279 GISLLVFYAIGISVYRHQGLIFVNCNDTRPYSQVFYHQIVSAETYFPFSSYY 434
G+S ++F + + GL N + R Q F+ +VS YFP +S+Y
Sbjct: 182 GVSDMIFDLVAKKLI---GLDVTNSRELRKNFQDFFQGMVSFPIYFPGTSFY 230
>02_01_0414 - 3034037-3034330
Length = 97
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 284 YSQ*NKRHPTAENNSGHRLSQECFLPEAMVHPGDTVVSGA 165
YS+ + E S RL++EC +HPGD + A
Sbjct: 23 YSRRRRAAALREEESNERLARECLDHYNALHPGDVTLCSA 62
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 715 LYGKTSNTMPGISFPNGTSI 656
L+G+ S T PG S+P+G I
Sbjct: 44 LFGRQSGTAPGFSYPSGDKI 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,751,057
Number of Sequences: 37544
Number of extensions: 540355
Number of successful extensions: 1320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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