Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0273.Seq
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical protein
            B0379.3b protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 497  RRFTQYTFNKLVQTRKTNVFEKNNRRSIQDFRLKYKSVNLTIMLLSKFMGDDSNGGSI 670
            R F+  + N+    R+  +F+    + ++D  L+Y+S+NLT++ + +   + S   +I
Sbjct: 958  RSFSVLSSNRQPSNREL-IFQDGIEKELRDIILRYRSMNLTVLTVQELRTEVSRRPAI 1014


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical protein
            B0379.3a protein.
          Length = 1054

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +2

Query: 497  RRFTQYTFNKLVQTRKTNVFEKNNRRSIQDFRLKYKSVNLTIMLLSKFMGDDSNGGSI 670
            R F+  + N+    R+  +F+    + ++D  L+Y+S+NLT++ + +   + S   +I
Sbjct: 962  RSFSVLSSNRQPSNREL-IFQDGIEKELRDIILRYRSMNLTVLTVQELRTEVSRRPAI 1018


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 40  NKTLSAIFVFRMVDHDPGLKQEENYPLLKVD 132
           N  LS ++VFR  D+     Q +N PLLKVD
Sbjct: 49  NSMLSGLYVFRAGDNQECDFQIKNNPLLKVD 79


>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 488 LPDRRFTQYTFNKLVQTRKTNVFEKNNRRSIQD 586
           +PD RFT++ ++   +TR    F+K N   + D
Sbjct: 35  IPDLRFTKFEYSFEAETRAREQFDKQNEPIVLD 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,835,002
Number of Sequences: 27780
Number of extensions: 447585
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)