Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0273.Seq
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    29   4.7  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    29   4.7  
At2g24240.1 68415.m02895 potassium channel tetramerisation domai...    29   4.7  
At2g20770.1 68415.m02441 lanthionine synthetase C-like family pr...    28   8.2  

>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 681 LVFPMEPPLESSPINLLKSMIVRFTLLYFSLKS*MDLLLFFSKTFV 544
           + + ++ P  SSPI  + +M+   ++LY   K+ + L+L F+KT V
Sbjct: 173 VTYVVDTPRSSSPITFMSNMLYACSILY---KTRLPLVLAFNKTDV 215


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 681 LVFPMEPPLESSPINLLKSMIVRFTLLYFSLKS*MDLLLFFSKTFV 544
           + + ++ P  SSPI  + +M+   ++LY   K+ + L+L F+KT V
Sbjct: 173 VTYVVDTPRSSSPITFMSNMLYACSILY---KTRLPLVLAFNKTDV 215


>At2g24240.1 68415.m02895 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 136 GGGDSCVGPQAPLTTVSPGWTIASGRKHSWLN 231
           G  D   G Q      SPGW++    K  WLN
Sbjct: 240 GVWDQITGKQTDFFYESPGWSLGDADKLQWLN 271


>At2g20770.1 68415.m02441 lanthionine synthetase C-like family
           protein contains Pfam domain, PF05147: Lanthionine
           synthetase C-like protein
          Length = 405

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 779 HGIIGLIHPLMPTGCRPD*EGPLR*NLKYDARX*FSQWN 663
           HG+ G++H LM    +PD    ++  LKY  +  F   N
Sbjct: 223 HGLAGIMHVLMDVQLKPDEAEDVKGTLKYMIKNRFPSGN 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,420
Number of Sequences: 28952
Number of extensions: 429256
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)