Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0272.Seq
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 28 1.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.3
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.1
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 26 5.4
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 7.1
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 7.1
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 9.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 73 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRR-RAKSSQMS*TN*YETTR*TAWST 249
+P + T S++TI+SS+P+T+ + + T S+ ++ T T T+ S
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSV 561
Query: 250 PITLAPGLQGHRPXIVSQLSSDLSSPKTRLSLCTSATV 363
P T P + +S + S+P T + TS +V
Sbjct: 562 PYTSTPVTSSN--YTISSSTPVTSTPVTTTNCTTSTSV 597
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/98 (24%), Positives = 42/98 (42%)
Frame = +1
Query: 73 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 252
+ TSL++ SS +SSS + L +S+ + S S T ++ + S+
Sbjct: 10 VDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSS 69
Query: 253 ITLAPGLQGHRPXIVSQLSSDLSSPKTRLSLCTSATVS 366
+P +VS S SS L+ +SAT++
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLT 107
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 468 LWENNKVYFKILNTNVTNTWYWESALTGTATIWXSESTAS 587
LW N+ VY+ + +++ T T S TG+ T + +TAS
Sbjct: 737 LWANDAVYYPVSSSSTTTT----STSTGSVTTTSTTATAS 772
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 105 QLYNSVVVADYDSAVEKSKHLYEEKKS 185
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 295 VSQLSSDLSSPKTRLSLCTSATV 363
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 425 QGQDKPESQLEVNRSVGEQQGLLQDLEHERNQYLVLGVGTNW 550
+G KP + +++++ + G L+D + E N L G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.4
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +3
Query: 123 VVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGDCFP 302
V A+ + AV KH+ V VVN+ + K N + +F T S F
Sbjct: 27 VTAEDEKAVTNKKHINSSATVHVFHGVVNRTFK-TKGNTVGLPKSFSKAVIETLSYKPFA 85
Query: 303 ---VEFRLIFAENAIKLMYKRDGLALTLSNDVQGDD 401
+ R N L+Y + LA S+D+ G D
Sbjct: 86 PICIHSRSDEVVNGFPLIYFPEDLA---SHDISGKD 118
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 488 LLQDLEHERNQYLVLGVGTNWNGDHM 565
LLQ+L HE ++V +G+N N DH+
Sbjct: 450 LLQELSHE---HIVQYLGSNLNSDHL 472
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 735 IXTGRVNPEIPEHLRL 782
I TGRV EIPE LRL
Sbjct: 70 IFTGRVKDEIPEALRL 85
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 346 ISLIAFSAKISLNSTGKQSPDDVLGALEPKL*AYSMQFILLFRISLFTTFVMTSLFFSSY 167
I LI FS S+ + + + +L + + AYS F L LF+ + S S+
Sbjct: 517 IKLILFSKSFSVLQSTSEKIEQLLVSFQRNPSAYSKSFTLALAEWLFSRRLFQSALLYSF 576
Query: 166 K 164
K
Sbjct: 577 K 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,238
Number of Sequences: 5004
Number of extensions: 48742
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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