Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0272.Seq
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   7.5  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 159 KHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGDCFPVEFRLIF 323
           K L E+K++E   +V+NK+   N     E    + ++A  T +    PVEF L+F
Sbjct: 175 KKLPEDKRNEY-QSVLNKIDNYNMQELGELIKKYDAKATTTGNDLSDPVEFNLMF 228


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 431 QDKPESQLEVNRSVGEQQGLLQDLEHERNQY 523
           + KP S    NR+ G ++G +QD   +R  Y
Sbjct: 354 ESKPSSSSSKNRNTGLERGRVQDFGRDRRDY 384


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 70  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 201
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,905,957
Number of Sequences: 59808
Number of extensions: 378066
Number of successful extensions: 997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)