Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0272.Seq
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.16 
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ...    29   3.5  
At5g64820.1 68418.m08155 hypothetical protein                          28   6.2  
At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    28   6.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 3   LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 182
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 183 SEVITNV 203
             +  N+
Sbjct: 214 GSIAPNL 220


>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
           vesicle soluble NSF attachment protein receptor VTI1a
           (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
           11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
           (Vesicle soluble NSF attachment protein receptor VTI1a)
           (AtVTI1a) {Arabidopsis thaliana}
          Length = 221

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 256 TLAPGLQGHRPXIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 435
           TL P L+      + +  SDL++ KT +   TS  ++      + +A MAD  TA+A  R
Sbjct: 61  TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120


>At5g64820.1 68418.m08155 hypothetical protein 
          Length = 145

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 437 CLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIXG 285
           C+++ +  G SA  A +  A ++ E  ++V  ++ +FG      +WE I G
Sbjct: 15  CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELIQG 65


>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 LYEEKKSEVITNVVNKLIRNNKMNCM-EYAYNFGSRAPRTSSGDCFPVEFRLIFAENAIK 341
           LY+  + E +  + + +IR+  + C+ EY YN       T+   C     +L + E A+K
Sbjct: 364 LYKANRYEDVLQLFD-MIRSENLCCLNEYLYN-------TAMVSCQ----KLGYWEKAVK 411

Query: 342 LMYKRDGLALTLS 380
           L+Y+ +G  LT+S
Sbjct: 412 LLYEMEGSGLTVS 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,091
Number of Sequences: 28952
Number of extensions: 265133
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)