Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0271.Seq
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   3.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   6.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.5  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 477 GYHCQDRGNLGFFKGAFSNVLRGTG 551
           GY C+ R    F    F N ++GTG
Sbjct: 376 GYGCEHRWRQIFNMVGFRNAVQGTG 400


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 477 GYHCQDRGNLGFFKGAFSNVLRGTG 551
           GY C+ R    F    F N ++GTG
Sbjct: 375 GYVCEHRWRQIFNMVGFRNAVQGTG 399


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 510 FFKGAFSNVLRGTGGAFVLVLYDEI 584
           F    ++  L  TGG  V+ L DEI
Sbjct: 507 FRPNTYNRFLAATGGDHVISLIDEI 531


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 553 PPVPLRTLEKAPLKKPRFPRSWQ 485
           PP P     K   +KPR PR  Q
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRPTQ 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,376
Number of Sequences: 336
Number of extensions: 3305
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)