Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0269.Seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_214| Best HMM Match : Arf (HMM E-Value=0)                          122   3e-28
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         60   1e-09
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         60   2e-09
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         56   2e-08
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         54   1e-07
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         50   2e-06
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)                     47   2e-05
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   46   3e-05
SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   7e-05
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         42   4e-04
SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         41   8e-04
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.7  
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.7  
SB_6166| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_214| Best HMM Match : Arf (HMM E-Value=0)
          Length = 148

 Score =  122 bits (294), Expect = 3e-28
 Identities = 58/87 (66%), Positives = 67/87 (77%)
 Frame = +1

Query: 286 LAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVFLVDACXRPRLP 465
           +AQHVPTLHPTSEELS+G MRFTTFDLGGH+QARR+ +DYFPAV+ IVF++D     RL 
Sbjct: 1   MAQHVPTLHPTSEELSMGGMRFTTFDLGGHRQARRIWKDYFPAVNGIVFIIDCADFERLA 60

Query: 466 ESKAELDSLLTDETPVTALC*FSGNKI 546
           ESK ELDSLL DE   +      GNKI
Sbjct: 61  ESKKELDSLLADEQLSSCPVLILGNKI 87


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/83 (34%), Positives = 48/83 (57%)
 Frame = +1

Query: 256 TLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVFL 435
           T+L+ LK + +   VPTL    E ++  ++ FT +D+GG  + R + R Y+     I+F+
Sbjct: 11  TILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIRALWRVYYQGCQGIIFV 70

Query: 436 VDACXRPRLPESKAELDSLLTDE 504
           VD+  R R  E++ EL  LL +E
Sbjct: 71  VDSADRERAEEARNELHKLLAEE 93


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/94 (32%), Positives = 52/94 (55%)
 Frame = +1

Query: 223 LVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVXRD 402
           L+ G     + T+L+ LK D     +PT+    E +   +++FT +D+GG  + R + R 
Sbjct: 94  LMVGLDAAGKTTILYHLKLDEPVNTIPTIGFNVEVVEYKNIKFTVWDIGGQDKIRLLWRL 153

Query: 403 YFPAVDAIVFLVDACXRPRLPESKAELDSLLTDE 504
           YF     ++F+VD+  R R+ E+K EL  LL +E
Sbjct: 154 YFQETQGLIFVVDSNDRDRIQEAKEELFKLLKEE 187


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/113 (28%), Positives = 59/113 (52%)
 Frame = +1

Query: 205 EKVGQALVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 384
           +K  + L+ G     + T+L+ LK   +   +PT+    E +   ++ FT +D+GG  + 
Sbjct: 15  KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVESVEYKNISFTVWDVGGQDKI 74

Query: 385 RRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLLTDETPVTALC*FSGNK 543
           R + R YF     ++++VD+  R R+ ESK EL+ +L ++    A+     NK
Sbjct: 75  RPLWRHYFQNTQGLIYVVDSNDRERVNESKEELNKMLQEDELKDAVVLVMANK 127


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/100 (28%), Positives = 55/100 (55%)
 Frame = +1

Query: 205 EKVGQALVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 384
           +K  + L+ G     + T+L+ LK   +   +PT+    E +   ++ FT +D+GG  + 
Sbjct: 15  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74

Query: 385 RRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLLTDE 504
           R + R YF     ++F+VD+  R R+ E++ EL+ +L ++
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRERVGEAREELNRMLNED 114


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +1

Query: 247 REETLLHMLKDDRLAQHVPTLHPTSEELS-IGSMRFTTFDLGGHQQARRVXRDYFPAVDA 423
           R+ T+L+ LK       VPT+    E +S   ++ F+ +D+GG  + RR+ R YF   + 
Sbjct: 121 RKTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIRRLWRHYFQGAEG 180

Query: 424 IVFLVDACXRPRLPESKAELDSLL 495
           I+F+VD+  + R+ E + EL  +L
Sbjct: 181 IIFVVDSADKERIFEVREELTRVL 204


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +1

Query: 256 TLLHMLKDDRLAQHVPTLHPTSEELS-IGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVF 432
           T+L+ LK       +PT+    E L    ++  T +D+GG  + R + R YF   + ++F
Sbjct: 34  TILYKLKLKETVSTIPTIGFNVETLQPTKNVTLTIWDVGGQDKIRPLWRHYFQGTEGLLF 93

Query: 433 LVDACXRPRLPESKAELDSLLTDE 504
           +VD+    R+PE+K EL  +L  +
Sbjct: 94  VVDSSDVLRMPEAKEELHGVLDSD 117


>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
          Length = 260

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
 Frame = +1

Query: 169 LVHWSVGISWSMEKVGQALVSGT*QCREETLLHMLKDDRLAQH-VPTLHPTSEELSIGSM 345
           ++ W   + W  E++   LV G     + T ++++   + ++  +PT+     ++S G++
Sbjct: 8   ILDWFKSLFWK-EEMELTLV-GLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVSKGNV 65

Query: 346 RFTTFDLGGHQQARRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLL 495
               +D+GG  + R +   Y   V+ IV++VDA    +L  SK EL +LL
Sbjct: 66  TIKVWDIGGQPRFRSMWERYCRGVNCIVYMVDAADHDKLEASKNELHNLL 115


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +1

Query: 322 EELSIGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLLTD 501
           E +   ++ FT +D+GG  + R + R YF     ++F+VD+  R R  E+K EL  +L +
Sbjct: 503 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERAGEAKEELSRMLAE 562

Query: 502 E 504
           +
Sbjct: 563 D 563


>SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +1

Query: 346 RFTTFDLGGHQQARRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLLTDE 504
           +   +D+GG +  R   R+YF + D ++++VD+  + RL + K EL  LL +E
Sbjct: 3   KLNIWDVGGQRSLRSYWRNYFESTDGLIWVVDSADQRRLADCKMELQGLLVEE 55


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 256 TLLHMLKDDRLAQHVPTLHPTSEELS-IGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVF 432
           ++L+  K       VPT     E +     +RF  +D+GG +Q R + + Y    DA+++
Sbjct: 36  SILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNRPLWKAYARQTDAVIY 95

Query: 433 LVDACXRPRLPESKAELDSLL 495
           +VD+    +L E++ EL +LL
Sbjct: 96  VVDSTSAGKLEEARDELFNLL 116


>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 361 DLGGHQQARRVXRDYFPAVDAIVFLVDACXRPRLPESKAELDSLLTD 501
           D+GG  + R + R YF     ++F+VD   R R+ E++ EL  ++ D
Sbjct: 143 DVGGQDKIRPLWRHYFAGSQGLIFVVDCADRDRIDEARKELQRIIND 189


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 274 KDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVFLV 438
           + D L   V T        +   + F  FD+GG +  R+     F  V AI+F V
Sbjct: 171 EQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV 225


>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 274 KDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVXRDYFPAVDAIVFLVDA 444
           K D L     T      E  I S+ F   D+GG +  R      F  V +I+FLV +
Sbjct: 383 KQDMLHSRKATKGIVEHEFMIKSIPFKMVDVGGQRSQRAKWFQCFDEVTSILFLVSS 439


>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 638

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 454 PRLPESKAELDSLLT 498
           PRLPE+KA LD+LLT
Sbjct: 296 PRLPEAKATLDTLLT 310


>SB_6166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 412 AVDAIVFLVDACXRPRLPESKAELD 486
           ++D  V LVDAC R R+PE   + D
Sbjct: 99  SLDTAVKLVDACCRYRIPEPTRQAD 123


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 490  TSLVQPWTPADVAGXTRRPGTLSRPPRGSSRATHDAPADAHRGRT 356
            T+ + P  P +      RPG  + PPR S       P  + RG +
Sbjct: 1733 TTFIDPRLPVNTTDRRPRPGPETEPPRRSRAPPPRPPPPSSRGHS 1777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,382
Number of Sequences: 59808
Number of extensions: 374802
Number of successful extensions: 1002
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)