Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   0.85 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 96  KFLETLGSNATKAYDLRSLLFLR 28
           +FLE  G  A  A DLR  LF R
Sbjct: 379 RFLEPFGVMADPAVDLRDPLFFR 401


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +3

Query: 339 AGGLTTXNISSXLXQRKLS-----QIGAYVSASGD 428
           A G  T  I+  L  R+LS     QIG YV+ +GD
Sbjct: 437 ASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGD 471


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 349 SPPADPSTCDNPNSAC 302
           +PP DP+ C  P+  C
Sbjct: 160 APPCDPAVCVLPDCFC 175


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 5/25 (20%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  LLPKVSKNLRXWHPKLSSPPLFVML 145
           ++P++   +  W+P   + P+ V +
Sbjct: 521 IMPRIQAEVNIWNPLTDTIPIHVWI 545


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 346 PPADPSTCDNPNSACGS 296
           PP  P T  NP++ C S
Sbjct: 186 PPIFPPTMINPSAICES 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,387
Number of Sequences: 336
Number of extensions: 1548
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)