Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454...    41   9e-04
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583...    29   2.8  

>01_06_0648 -
           30844289-30844341,30844536-30844648,30845435-30845484,
           30845572-30845642,30845725-30845797,30846744-30846841,
           30846936-30847002,30847150-30847230,30847312-30847479,
           30847563-30847730,30847813-30848109,30848205-30848426,
           30849287-30849325
          Length = 499

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   V +    GS YE  A  G SH+L      +T N S     R++  IG  VSAS  R
Sbjct: 89  PAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASR 148

Query: 432 EFIXYXLEGXXGXIXXM 482
           E + Y  +     +  M
Sbjct: 149 EQMCYTYDAFKAYVPEM 165


>03_02_0138 +
           5837813-5838490,5839000-5839164,5839289-5839426,
           5839496-5839647,5839754-5839862,5840551-5840649,
           5840739-5840804,5840891-5840998,5841820-5841906
          Length = 533

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDREFIX 443
           V +   AGSRYE +   G++H +       T + ++   + ++  IG +++A   RE   
Sbjct: 123 VGVWIDAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQLEEEIENIGGHLNAYTSREQTT 182

Query: 444 Y 446
           Y
Sbjct: 183 Y 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,959
Number of Sequences: 37544
Number of extensions: 179669
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)