Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         38   0.005
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.7  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIG 404
           P++RV + F AGSRYE  + LG++H+L +A  L           ++++ +G
Sbjct: 49  PISRVGLFFDAGSRYETDSNLGITHMLRNAAYLLLDFKGKHFVGKRMALVG 99


>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 123 DESFGCHXRKFLETLGSNATKAYDLRSLLFLRKSLG 16
           DE F    RKF+E + S   +  D+  L+ + KSLG
Sbjct: 26  DERFLFQSRKFMEMINSAVDRLNDISLLVMILKSLG 61


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 36  REDSVNHKPLLRYYLKFLKTYXNGIQNSRRPLYSSCYDQGLR 161
           R D VN +  L   L+  +    GI   RR LYS C+D+ +R
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIR 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,436
Number of Sequences: 59808
Number of extensions: 204626
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)