Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrom...    54   5e-07
BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c ...    54   5e-07
BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.       54   5e-07
L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c re...    31   4.1  
D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.         31   4.1  
BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c ...    31   4.1  

>J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrome
           bc-1 complex core protein II mRNA, complete cds. ).
          Length = 453

 Score = 53.6 bits (123), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           PV+R+ +  KAGSRYE  + LG +H+L     LTT   SS    R +  +G  +S +  R
Sbjct: 57  PVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATR 116

Query: 432 EFIXYXLEGXXGXI 473
           E + Y +E   G +
Sbjct: 117 ENMAYTVECLRGDV 130


>BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c
           reductase core protein II protein.
          Length = 453

 Score = 53.6 bits (123), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           PV+R+ +  KAGSRYE  + LG +H+L     LTT   SS    R +  +G  +S +  R
Sbjct: 57  PVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATR 116

Query: 432 EFIXYXLEGXXGXI 473
           E + Y +E   G +
Sbjct: 117 ENMAYTVECLRGDV 130


>BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.
          Length = 453

 Score = 53.6 bits (123), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           PV+R+ +  KAGSRYE  + LG +H+L     LTT   SS    R +  +G  +S +  R
Sbjct: 57  PVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATR 116

Query: 432 EFIXYXLEGXXGXI 473
           E + Y +E   G +
Sbjct: 117 ENMAYTVECLRGDV 130


>L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core I protein protein.
          Length = 480

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   V +    GSR+E +   G  + L       T N      ++++  +GA+++A   R
Sbjct: 67  PTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTR 126

Query: 432 EFIXYXLE 455
           E   Y ++
Sbjct: 127 EHTAYYIK 134


>D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.
          Length = 480

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   V +    GSR+E +   G  + L       T N      ++++  +GA+++A   R
Sbjct: 67  PTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTR 126

Query: 432 EFIXYXLE 455
           E   Y ++
Sbjct: 127 EHTAYYIK 134


>BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core protein I protein.
          Length = 480

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   V +    GSR+E +   G  + L       T N      ++++  +GA+++A   R
Sbjct: 67  PTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTR 126

Query: 432 EFIXYXLE 455
           E   Y ++
Sbjct: 127 EHTAYYIK 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,694,749
Number of Sequences: 237096
Number of extensions: 1001555
Number of successful extensions: 1485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)