Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0267.Seq
(796 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 29 0.057
AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant transcrip... 25 0.70
AY884063-1|AAX84204.1| 682|Tribolium castaneum pro-phenol oxida... 24 1.2
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 23 2.1
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 23 2.1
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 23 2.1
EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine hydroxy... 23 3.7
DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped prot... 22 4.9
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 22 4.9
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 22 4.9
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 21 8.6
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 28.7 bits (61), Expect = 0.057
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 237 FRQRFPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 377
+R+RF + ++ +A G + QAE LS + A L T+N SS L
Sbjct: 239 YRKRFRMEKIYVALVWGVK--DQAEFTLSGQVMKYAALATENFSSLL 283
>AF243042-1|AAF68438.1| 126|Tribolium castaneum mutant
transcription factor TcDfd1 protein.
Length = 126
Score = 25.0 bits (52), Expect = 0.70
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = -2
Query: 501 SYSGSPVHHSICPVLL----PKCN 442
S+ G P+HH I P +L P CN
Sbjct: 91 SHHGPPIHHQIRPPILHDTQPMCN 114
>AY884063-1|AAX84204.1| 682|Tribolium castaneum pro-phenol oxidase
subunit 1 protein.
Length = 682
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 96 KFLETLGSNATKAYDLRSLLFLR 28
+FLE G A A DLR LF R
Sbjct: 379 RFLEPFGVMADPAVDLRDPLFFR 401
Score = 22.6 bits (46), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 374 PYSTQTLSDWSIC*CFWRQRIHLLHFGSNTG 466
P LS+++ C C W Q + LL G+ G
Sbjct: 565 PTGGDALSEFNFCGCGWPQHM-LLPKGTEAG 594
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 501 SYSGSPVHHSICPVLL 454
S+ G P+HH I P +L
Sbjct: 91 SHHGPPIHHQIRPPIL 106
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 501 SYSGSPVHHSICPVLL 454
S+ G P+HH I P +L
Sbjct: 91 SHHGPPIHHQIRPPIL 106
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 501 SYSGSPVHHSICPVLL 454
S+ G P+HH I P +L
Sbjct: 91 SHHGPPIHHQIRPPIL 106
>EF592178-1|ABQ95974.1| 532|Tribolium castaneum tyrosine
hydroxylase protein.
Length = 532
Score = 22.6 bits (46), Expect = 3.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 316 PNSACGS*REPALKAIVTRVTGNRCLKQLRTSC*VKH--LIGS*HLS 182
PN + + + +K +TRV+ + +K LR S ++H LIG ++S
Sbjct: 144 PNQSDNNQLDALVKVEMTRVSLLQLIKSLRQSSSLEHCTLIGEDNIS 190
>DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped
protein.
Length = 126
Score = 22.2 bits (45), Expect = 4.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 582 PKFVAGRIAP*RQXI 626
PK VAG++ P RQ I
Sbjct: 67 PKLVAGKLKPKRQFI 81
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 22.2 bits (45), Expect = 4.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 453 EATQDKLNDALEILNNLVSTKSSDHGNS 536
E+ +DK ++ NNL +K++ GN+
Sbjct: 444 ESKKDKKGSQVDHKNNLGDSKNNQDGNN 471
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 22.2 bits (45), Expect = 4.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 453 EATQDKLNDALEILNNLVSTKSSDHGNS 536
E+ +DK ++ NNL +K++ GN+
Sbjct: 336 ESKKDKKGSQVDHKNNLGDSKNNQDGNN 363
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 21.4 bits (43), Expect = 8.6
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +1
Query: 178 VKKDVRIQSSVLPNKTFVAALDNGSPLPVSQSPSKLALVMNHKLN 312
+KK+ S P N S L + SPS L H+ N
Sbjct: 238 IKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYN 282
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,499
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -