Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0267.Seq
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    42   1e-04
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    41   2e-04
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    36   0.009
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.4  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   7.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   7.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   9.4  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 40/81 (49%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           +++   AGSRY+P A  G+SH+L   A  TT+  S+  I R+   +G  +S    RE I 
Sbjct: 45  LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102

Query: 444 YTLEATQDKLNDALEILNNLV 506
            T     + L     +L  +V
Sbjct: 103 LTARFLNEYLEYYARLLAEVV 123


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           V +   AGSR E     G +H L   A   TKN S   ++ +    GA+++A   RE   
Sbjct: 46  VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105

Query: 444 YTLEATQDKLNDALEILNNLVSTKS 518
           Y   A ++ + +A+ +L ++++  S
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTNSS 130


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 279 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 458
           KAGSRYE +   G+SH +   A   T+      ++ KL  +G     S  RE + Y    
Sbjct: 74  KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133

Query: 459 TQDKLNDALEILNNLV 506
             D +    ++L   V
Sbjct: 134 FNDDVKSMSKLLAETV 149


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 312 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 467
           L  S  L S +G  T+ N+S+   QR  ++   + S + D   +YY    T D
Sbjct: 79  LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 62  FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 169
           FVA L  V + L +WH KL     F  ++    PK+
Sbjct: 70  FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 329 YMRQSQFSLWFITRASFEGDCDTGNGEPLSKAATNVLLGKTL 204
           + R   FS+   +  +F G     NG PL+    NVLLG+ +
Sbjct: 360 FWRNQLFSVGPESAGAFPGPACYLNGGPLTVTDANVLLGRII 401


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 532 FPWSELLVETKLFRISSASFN 470
           FPWS LL   KL  +  ++FN
Sbjct: 298 FPWSNLLHHIKLGMLDESNFN 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,141
Number of Sequences: 5004
Number of extensions: 63656
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)