Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0267.Seq
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 50 2e-06
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 35 0.065
12_02_0312 + 17395716-17398112 32 0.60
06_01_0093 - 776567-777335,777449-777747 30 1.8
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 29 3.2
06_01_1051 - 8305531-8306151 29 4.3
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 7.4
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 7.4
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 28 9.8
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 50.4 bits (115), Expect = 2e-06
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +3
Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
P V + GS YE A G SH+L A +T N S + R++ IG VSAS R
Sbjct: 89 PAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASR 148
Query: 432 EFIYYTLEATQDKLNDALEIL 494
E + YT +A + + + +E+L
Sbjct: 149 EQMCYTYDAFKAYVPEMVEVL 169
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 35.1 bits (77), Expect = 0.065
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
V + AGSRYE + G++H + T + ++ ++ ++ IG +++A RE
Sbjct: 123 VGVWIDAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQLEEEIENIGGHLNAYTSREQTT 182
Query: 444 YTLEATQDKLNDALEILNNLV 506
Y + + AL IL +++
Sbjct: 183 YYAKVLDKDVPRALNILADIL 203
>12_02_0312 + 17395716-17398112
Length = 798
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +3
Query: 327 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 506
+++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 507 STKS 518
S +S
Sbjct: 292 SGRS 295
>06_01_0093 - 776567-777335,777449-777747
Length = 355
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 603 FYRPRIWGGREIISYFRRGALSWSSHGL 520
F P WGGR Y+ + WS HGL
Sbjct: 285 FKNPERWGGRSNCLYYAHYSQPWSLHGL 312
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSA 419
+++A K GS E + E G++H++ A T ++ I + L IGA A
Sbjct: 80 LSLAVKVGSVVEEEDERGVAHIVEHLAFSATSRYTNHDIVKFLESIGAEFGA 131
>06_01_1051 - 8305531-8306151
Length = 206
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 78 GSNATKAYDLRSLLFLRKSLGNRVKN 1
GSN T A ++LFLR+ LG +KN
Sbjct: 41 GSNCTDAEKATTVLFLRRHLGETLKN 66
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 309 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 488
E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574
Query: 489 I 491
+
Sbjct: 575 L 575
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 106 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 246
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 479 IIQFVLCCFQ-SVIDEFSVSRSTNICSNL 396
+I +VL CFQ SVI F V S++ CS +
Sbjct: 159 VISYVLVCFQSSVILRFMVFFSSDFCSGI 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,031
Number of Sequences: 37544
Number of extensions: 420330
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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