Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0267.Seq
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    48   9e-06
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    46   3e-05
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    36   0.023
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    36   0.023
At5g54610.1 68418.m06800 ankyrin repeat family protein contains ...    30   1.5  
At5g53840.1 68418.m06690 F-box family protein (FBL13) contains F...    28   8.2  
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi...    28   8.2  
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    28   8.2  
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi...    28   8.2  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
           P   + +    GS YE     G +H+L   A  +T N S F + R++  IG   SAS  R
Sbjct: 93  PAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASR 152

Query: 432 EFIYYTLEATQDKLNDALEIL 494
           E + YT++A +  + + +E+L
Sbjct: 153 EQMGYTIDALKTYVPEMVEVL 173


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 42/81 (51%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
           P   + +    GS YE     G +H+L   A  +T N + F + R++  IG   SAS  R
Sbjct: 97  PAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASR 156

Query: 432 EFIYYTLEATQDKLNDALEIL 494
           E + YT++A +  + + +E+L
Sbjct: 157 EQMSYTIDALKTYVPEMVEVL 177


>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           V +   AGSR+E     G +H L       T   +   ++ ++  IG +++A   RE   
Sbjct: 121 VGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTT 180

Query: 444 YTLEATQDKLNDALEILNNLV 506
           Y  +     +N AL++L +++
Sbjct: 181 YYAKVLDSNVNQALDVLADIL 201


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           V +   AGSR+E     G +H L       T   +   ++ ++  IG +++A   RE   
Sbjct: 121 VGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTT 180

Query: 444 YTLEATQDKLNDALEILNNLV 506
           Y  +     +N AL++L +++
Sbjct: 181 YYAKVLDSNVNQALDVLADIL 201


>At5g54610.1 68418.m06800 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 426

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 640 GNSALHLGQRXXNDNFIRRLLQXFCKXRNIYXQVGCGRLPVI 765
           GN+ LHL     ND  +++L++     RNI  + G   L V+
Sbjct: 183 GNTVLHLAAYENNDKVVKQLVKCLSLDRNIQNKSGMTALDVL 224


>At5g53840.1 68418.m06690 F-box family protein (FBL13) contains
           F-box domain PF:00646
          Length = 444

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 426 DREFIYYTLEATQDKLNDALEILNNLVSTKSSDHGNSMIML 548
           D +F+ +T E T DK+     +L  L   KSS+    +I +
Sbjct: 168 DLDFVNFTNETTLDKIISCSPVLEELTIVKSSEDNVKIIQV 208


>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 691

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 178 VKKDVRIQSSVLPNKTFVAALDNGSPLPVSQSPSKL 285
           VK DV   +SVLP  + +AAL+ G  + +S S S+L
Sbjct: 406 VKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRL 441


>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 312 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDAL 485
           + +  +++S   +  K I + +   K S I  +     D  FIY +LE     LND +
Sbjct: 484 VAVKRLVQSHHDVAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLI 541


>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 633

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 440 DEFSVSRSTNICSNLREFALNKE 372
           DE++VS   +ICS+LRE +  K+
Sbjct: 234 DEYTVSMVVSICSDLRELSKGKQ 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,888
Number of Sequences: 28952
Number of extensions: 339770
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)