Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0265.Seq
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    26   5.5  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   9.5  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 679 KNLDSKSLKGIYFTVPSDVF--KAYVTARESPNXSGMRFV 566
           K   +K + GIY    +DVF  KA+  + +    SG+ FV
Sbjct: 55  KQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFV 94


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 97  IDFTEMRQRQSHLQLSKRFNLNSFLLSPTAFDLQFTNQ 210
           IDF    +++ +   SKR  L+  L  PT  +++F N+
Sbjct: 67  IDFRFFSKKKKNEHFSKRRKLSKVLTPPTNDEIKFVNR 104


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 409 YISMKNIINVACILQRLSVLHCKMFDLRYYV-DVFKNT 299
           Y+  KNI  +AC++   ++  C  +    Y  D F++T
Sbjct: 155 YVIRKNIEKLACLVHNEAMRRCSSYTSAIYTWDFFQDT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,834
Number of Sequences: 5004
Number of extensions: 59085
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)