Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0263.Seq
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)               29   6.3  
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)                   28   8.3  
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              28   8.3  

>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
          Length = 684

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 176 SDACPPIRNVTHPLRYYEFTQDEIKALKNVTRRASINAVSRS 301
           S++ PP+R+V+ P       +++    + V  R S N +SRS
Sbjct: 319 SNSAPPLRSVSFPASLNHIGREDRDVGRQVAHRGSTNDLSRS 360


>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 512 DWRDFNASTDPFNVRGHLPMVYNSGCWVPVAPL 610
           +W+  NAS D + V   L  VYN+  ++ +APL
Sbjct: 4   NWQAMNASEDMYEVSRGLWAVYNNAGFMTLAPL 36


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 267 QGELLSTLSPVQCAVRFSNIRCRQIWT 347
           Q  L S  S   C VRF+  R R++WT
Sbjct: 280 QNLLTSAASYASCLVRFTEARVRRVWT 306


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 412 FLGKLSYQQACAEKLMALPGSYIGQILRDRKNERLEG-LQCQYRPLQCTGPLTHGI*FWM 588
           FLG  + +  C  KL  + G Y       R +    G  Q + R      P+  G+    
Sbjct: 354 FLGPNTEEVPCFPKLCPIDGFYGNWSAFTRCSLSCGGGTQSRNRSCDSPSPVGEGLNCTR 413

Query: 589 LGPSSSTSTWDTQPXPV 639
           LGP+      +TQP P+
Sbjct: 414 LGPALEIRVCNTQPCPI 430


>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 282 STLSPVQCAVRFSNIRCRQIWTSETKPKIWSIPK 383
           STLSP+QC V   N     +W  E  P I  I K
Sbjct: 221 STLSPIQCNVDTKN--AEGVWAKECAPVISPISK 252


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 212  PLRYYEFTQDEIKALKNVTRRASINAVSRSVRCSLL 319
            P+R Y+ T+  IKALKN+  ++     S +V C L+
Sbjct: 909  PVRPYDITESPIKALKNLASKSKHKPES-TVDCPLM 943


>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
          Length = 1111

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  CNALFLNKKGKKSVLSFHYDDY 96
           C AL  NKKGKK + +  Y+ Y
Sbjct: 127 CKALKANKKGKKPIHNLDYESY 148


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 167 SRTSDACPPIRNVTHPLRYYEFTQDEIKALKNVTRRASINAVSRSVRCSL 316
           S  ++ACP  R     L   E  +DE++ + N   R  I+++ R+++ SL
Sbjct: 468 SHRTEACPRCRESKDKLEDVEMERDELREMVNEKTR-RISSLERTLKTSL 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,839,420
Number of Sequences: 59808
Number of extensions: 626351
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)