Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0260.Seq
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.53 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.53 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   6.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 691 PREPAGWPRGFPGPPRVAS 635
           PRE   W R F GP R+A+
Sbjct: 592 PREQLTWRRNFHGPHRLAA 610


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 691 PREPAGWPRGFPGPPRVAS 635
           PRE   W R F GP R+A+
Sbjct: 484 PREQLTWRRNFHGPHRLAA 502


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 794 PPIGPGDFPPEGNRVPPGD 738
           PP+ P DFP  G+ VP G+
Sbjct: 627 PPV-PKDFPQCGDYVPSGN 644


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -1

Query: 385 ISIRNFQRSTLIFKCSHNKISNTSLITF-----WSLKFSK 281
           +S  NF+  + +  CS+  + + S  TF     W + FSK
Sbjct: 101 VSNNNFKTYSNVTTCSYYSLDDLSEDTFYDIRLWGVSFSK 140


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 636 PINPPLIRNHAPNGNQVPGAYSGCSXPMA 550
           P +  +    APNG+Q    Y+ C    A
Sbjct: 113 PSSMHMANTAAPNGHQTQVVYASCKLQAA 141


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -2

Query: 636 PINPPLIRNHAPNGNQVPGAYSGCSXPMA 550
           P +  +    APNG+Q    Y  C    A
Sbjct: 115 PSSMHMANTAAPNGHQTQVVYDSCKLQAA 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,907
Number of Sequences: 336
Number of extensions: 3692
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)