Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0260.Seq
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   1.0  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   2.3  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.4  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 361 STLIFKCSHNKISNTSLITFW 299
           ST IF CS +KI N  L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -2

Query: 579 AYSGCSXPMAGNQSVRGLVLLRTLVCDDHRRGXESQSCRTVVNNNGKVTKYKVEN*TNKI 400
           +Y G   P A ++  +    +RT   +D RR   + S R  +    K+ + ++E    ++
Sbjct: 242 SYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKK--KLKEQQLERTAKEL 299

Query: 399 SNKIKFL 379
           + K+  L
Sbjct: 300 TEKVAIL 306


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 352 IFKCSHNKISNTSLITFWSLKFSKIMAKH 266
           I K SH+KIS + LIT   + +S++  K+
Sbjct: 18  ISKISHSKISISELITLLDIHYSELFTKN 46


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = -1

Query: 793 PQLAPGISPRRETGFPPGI--ARKLFPEIPGFRARFPREPAGWPRGFPGPP 647
           P L P   P      PP +       P +P      P  PAG P   P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 522 LLRTLVCDDHRRGXESQSCRTVVNNNGKVTKYKVEN 415
           LLR LV + H++   +++  T++N+   + +Y+V N
Sbjct: 199 LLRMLVYNAHKQKFYNETLPTLLNHMQVLNEYRVSN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,185
Number of Sequences: 5004
Number of extensions: 55416
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)