Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0260.Seq
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 32 0.60
09_03_0207 - 13486694-13487047 31 0.80
12_02_0299 - 17051570-17052474,17053542-17053755 30 2.4
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.2
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 29 3.2
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 29 5.6
06_01_0178 + 1386981-1387505 28 7.4
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 7.4
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 28 9.8
05_06_0078 - 25412770-25413852 28 9.8
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 28 9.8
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 28 9.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.8
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 784 APGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPPRVA 638
AP PRR + P A +P PG +A+F PA + P PP A
Sbjct: 259 APAFPPRRPNSWAPSPAP--WPYTPGQQAKFSPPPALYASPTPSPPTFA 305
>09_03_0207 - 13486694-13487047
Length = 117
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 666 RGQPAGSRGKRARKPGISGKSFLAIPGGNPVSLRGEIPGANWG 794
RG SRG+R PG++ LA GG RG A WG
Sbjct: 21 RGGGCRSRGRRRWSPGLAADLDLATEGGRRGDRRGIAGAAMWG 63
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -1
Query: 796 FPQLAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPP 647
FP L P SP PP FP++P FP P+ +P P PP
Sbjct: 277 FPHLPPIFSPPSPPPPPPPAFPFPFPQLPPL-PHFPPLPSFYPSPPPPPP 325
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -1
Query: 784 APGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPP 647
AP + RR PP A P P A P P P G P P
Sbjct: 698 APHLRARRAPTSPPAAATPRAPTPPAAAAAAPAAPPALPSGLPSWP 743
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 645 LGGPGKPRGQPAGSRGKRARKPGISGK 725
+GG + RG+ GSRG+R R+P +G+
Sbjct: 229 VGGEPEERGRHRGSRGRRPRRPCRAGR 255
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -1
Query: 781 PGISPRRETGFPPGIARKLFPEIPGFRARFPRE---PAGWPRGFPGPPRVAS 635
P PRR T PP P+ P + + R PAG G P PPR A+
Sbjct: 37 PPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAAGTPAPPRAAA 88
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 648 GGPGKPRGQPAGSRGKRARKPGISG 722
G PG+P G+ G RG R + G SG
Sbjct: 13 GEPGQPGGRGRGGRGGRGGRGGASG 37
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 789 NWPRGFPPGGKPGSPRG 739
NWP G+P GG PG P+G
Sbjct: 939 NWPLGWPVGGYPG-PQG 954
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 665 PGPTRGLPGETGPETWNFREKFPGN 739
P P R PG+TGP W + P N
Sbjct: 134 PSPARPNPGKTGPWAWTDGIRMPWN 158
>05_06_0078 - 25412770-25413852
Length = 360
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 633 WEATLGGPGKPRGQPAGSRGKRARKPGISGKSFLAIPGGNPVSLRG 770
WE T+GG G AG G + G S A GG+ V G
Sbjct: 94 WEGTVGGGAGEGGDVAGGSGFAGEGGDVVGGSGFAGEGGDVVGGNG 139
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 789 NWPRGFPPGGKPGSPRG 739
NWP G+P GG PG P+G
Sbjct: 167 NWPLGWPLGGYPG-PQG 182
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 789 NWPRGFPPGGKPGSPRG 739
NWP G+P GG PG P+G
Sbjct: 140 NWPLGWPVGGFPG-PQG 155
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 665 PGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNP 778
PG +P + G + R PG P G+P PPG +P
Sbjct: 483 PGIGVAMPLD-GSDHGEQRPSIPGLPPGQPPLPPGPHP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,086,780
Number of Sequences: 37544
Number of extensions: 406956
Number of successful extensions: 1206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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