Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0260.Seq
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 37 0.022
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 36 0.050
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 34 0.12
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 34 0.12
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 33 0.20
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 32 0.47
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 30 1.9
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 30 2.5
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 4.3
SB_2060| Best HMM Match : DUF1590 (HMM E-Value=2.1) 29 4.3
SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34) 29 5.7
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 29 5.7
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 29 5.7
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015) 29 5.7
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 28 7.6
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 7.6
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 36.7 bits (81), Expect = 0.022
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 626 GLMG-SHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNP--RGEPGFP-PGGNP--RGQ 787
G+ G S P G PGP G PG +GP N R G P GEPG P P G P RG
Sbjct: 654 GMPGMSGPPGRPGPPGPP-GPPGPSGPSGSNGRNGVKGTPGRDGEPGIPGPDGRPGERGP 712
Query: 788 LGE 796
GE
Sbjct: 713 GGE 715
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Frame = +2
Query: 587 TWFPFGAWFRIXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPG--NPRGEPGF 760
TW F+ GL GS G PGE GP + PG P G PG
Sbjct: 398 TWTFLLCPFQGESGLAGSRGMPGVAGKNGNAGEPGERGPVGPQGPQGAPGTQGPPGLPGK 457
Query: 761 PPGGNPRGQLG 793
PRG+ G
Sbjct: 458 TGESGPRGERG 468
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 35.5 bits (78), Expect = 0.050
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 665 PGPTRGLPGETGPETWNFREKFPG--NPRGEPGFP-PGGNPRGQLG 793
PGP G PG GP+ N + PG P G PGF P GNP G +G
Sbjct: 45 PGPD-GPPGFPGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAIG 89
Score = 31.5 bits (68), Expect = 0.81
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGN-PRGQLGE 796
P G GP G PG G + + P P G+PG PPG N P G++GE
Sbjct: 569 PLGPPGEAGPP-GNPGGPGYQGNHGNPAGPQGPNGQPG-PPGVNGPPGEIGE 618
Score = 31.5 bits (68), Expect = 0.81
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = +2
Query: 644 PWGAWKTPGPTR--GLPGETGPETWNFREKFPGN---------PRGEPGFPPGGN-PRGQ 787
P G PGP G PGE+GP + GN P G+PG PPG N P GQ
Sbjct: 642 PPGPKGPPGPNGPLGPPGESGPAGNAGGVGYQGNHGNPAGVQGPNGQPG-PPGINGPPGQ 700
Query: 788 LGE 796
+GE
Sbjct: 701 IGE 703
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 623 GGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPG-GNPRGQLG 793
G M P G PGP +G PG GP PGNP G PG+ GNP G G
Sbjct: 204 GPQMPPGPPGLPGAPGP-KGPPGTNGPLGPPGDVGPPGNPGG-PGYQGNHGNPAGPQG 259
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFP-PGG--NPRGQLGE 796
P G GP GLPG GP + P G PG P P G P G+LG+
Sbjct: 56 PQGPNGPKGPP-GLPGPPGPPGFQGPPGNPAGAIGPPGLPGPNGVNGPPGELGD 108
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGN-PRGQLGE 796
P G GP G PG G + + P P G+PG PPG N P G LG+
Sbjct: 484 PLGPPGEAGPP-GNPGGPGYQGNHGNPAGPQGPNGQPG-PPGINGPPGPLGD 533
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGN-PRGQLGE 796
P G GP G PG G + + P P G+PG PPG N P G LG+
Sbjct: 314 PLGPPGDVGPP-GNPGGPGYQGNHGNPAGPQGPNGQPG-PPGINGPPGPLGD 363
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGN-PRGQLGE 796
P G GP G PG G + + P P G+PG PPG N P G LG+
Sbjct: 399 PLGPPGDVGPP-GNPGGPGYQGNHGNPAGPQGPNGQPG-PPGINGPPGPLGD 448
Score = 28.3 bits (60), Expect = 7.6
Identities = 26/63 (41%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Frame = +2
Query: 644 PWGAWKTPGPTR--GLPGETGPETWNFREKFPGN---------PRGEPGFPPGGN-PRGQ 787
P G PGP G PGE GP GN P G+PG PPG N P GQ
Sbjct: 812 PPGPKGPPGPNGPLGPPGECGPAGNAGGVGCQGNHGNPAGSQGPNGQPG-PPGINGPPGQ 870
Query: 788 LGE 796
+GE
Sbjct: 871 VGE 873
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +2
Query: 626 GLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
G+ G+ G K RG G+ GP R+ F G P G PG P P+G+ G
Sbjct: 22 GVKGARGGGGVKGEKGYRGELGKVGPSGPQGRKGFKGEP-GPPGLPGEQGPQGKFG 76
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/59 (44%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 626 GLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGF--PPG-GNPRGQLG 793
GL G P G PGP G PG G W PGNP G PG PPG P+G G
Sbjct: 1786 GLAG--PQGPKGMPGPP-GPPGPPGAIGWKGN---PGNPAGPPGLDGPPGPPGPQGPKG 1838
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 680 GLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
G+PG GP + +PGNP G PG P G+ G
Sbjct: 1841 GVPGPPGPPGAYGWKGYPGNPAGPPGRDGIPGPPGRQG 1878
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/48 (45%), Positives = 23/48 (47%)
Frame = +2
Query: 650 GAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
GA PGP GL GE GPE E P P G PG P RG+ G
Sbjct: 218 GAKGQPGPP-GLVGEPGPEG----EPGPVGPTGVPGLPGVKGDRGEQG 260
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 665 PGPTRGLPGETGPETWNFREKFPGNP--RGEPGFPP 766
P TRGL GE GP+ + PG P +GE G PP
Sbjct: 387 PNGTRGLQGEKGPQGDQGPKGEPGTPGAKGESGGPP 422
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 644 PWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
P G PG G+ G TGP+ + G P+GEPG P P G+ G
Sbjct: 1365 PPGLNGNPGAP-GVDGPTGPKGESGIAGLDG-PKGEPGLPGRDGPAGEKG 1412
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 650 GAWKTPGP--TRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
GA PGP T G G GP + + PG PRG G P RG +G
Sbjct: 885 GAKGEPGPLGTPGRQGLAGPPGRDGMKGDPG-PRGRDGLPGEPGARGDIG 933
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 680 GLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
GLPG G ET P P G PG P PRG G
Sbjct: 1037 GLPGPRG-ETGEKGLDGPSGPPGTPGQPGPPGPRGPEG 1073
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/64 (37%), Positives = 27/64 (42%)
Frame = +2
Query: 602 GAWFRIXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPR 781
G W R+ GG MG P G W G +G G W R + G RG PG G P
Sbjct: 290 GGWGRMQGGGMGRGPGGGW---GRMQGGMGRGPGGGWG-RMQGGGMGRG-PGGGLGRGPG 344
Query: 782 GQLG 793
G G
Sbjct: 345 GGWG 348
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 644 PWGAWKTPGPT--RGLPGETGPETWNFREKFPG--NPRGEPGFPPGGNPRGQLG 793
P G PGP G G TGP + + PG P GE G P+G++G
Sbjct: 773 PTGTRGIPGPQGKNGKMGPTGPRGPSGKNGEPGPQGPEGEAGANGVSGPKGEMG 826
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 651 GPGKPRGQPAGSRGKRARKPGISGKSFLAIPG-GNPVSLRG--EIPGANWG 794
GP P G P S PG G++ + +PG P RG +PGA++G
Sbjct: 477 GPPGPAGPPGPSGRYVPGPPGPPGRTVIGLPGPPGPAGPRGIPGLPGASFG 527
>SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 602 GAWFRIXGGLMGSHPWGA-WKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPG--- 769
G+ + + G +GS WG + G T G PGE TW + G+ RG PG G
Sbjct: 24 GSTWGVPGEYLGS-TWGVPGEYLGRTWGGPGEDLGRTWGGPGEDLGSTRGVPGKDLGRTW 82
Query: 770 GNPRGQLG 793
G P LG
Sbjct: 83 GGPGEDLG 90
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 632 MGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPG---GNPRGQLG 793
+GS G + G T G+PGE TW ++ G G PG G G P LG
Sbjct: 12 LGSTWGGPGEDLGSTWGVPGEYLGSTWGVPGEYLGRTWGGPGEDLGRTWGGPGEDLG 68
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 792 PNWPRGFPPGGKPGSPRGLPGNFS 721
P + G+PPG PG P G P ++
Sbjct: 11 PGYAPGYPPGYAPGHPPGYPPGYA 34
>SB_2060| Best HMM Match : DUF1590 (HMM E-Value=2.1)
Length = 69
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 793 PQLAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPA 677
P PG P + PG A K P PG R PR PA
Sbjct: 7 PPRVPGHDPFEQAAAQPGAATKTPP--PGLSMRAPRPPA 43
>SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)
Length = 635
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 126 LTLLVLISFL*INFQLWVLKSKRSVKKIFER 218
+T+LV++ I F LW K +R VKK +R
Sbjct: 557 ITVLVVVVLCLICFGLWKFKRRRKVKKALKR 587
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 605 AWFRIXGGLMGSHPWGAWKTPGPTR----GLPGETGPETWNFREKFPGNPRGEPGFPPGG 772
AW + GL+G P G P R GLPG+ G + K P GEPG P
Sbjct: 94 AWRKCARGLIG--PPGPPGKPVIRRVGIPGLPGKRG-DRGTPGAKGPPGLAGEPGEPGTQ 150
Query: 773 NPRGQLGE 796
PRG G+
Sbjct: 151 GPRGDPGD 158
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 665 PGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
P +G+ G G + + E PG P G PG P P+G+ G
Sbjct: 78 PAGVQGMEGRQGVQGKDGEEGPPG-PNGAPGRPGVRGPKGESG 119
>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
Length = 391
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 680 GLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
G G TGP FPG+ G+ GFP P G G
Sbjct: 90 GQKGPTGPPGEYGYNGFPGSRHGQSGFPGLHGPPGPKG 127
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 648 GGPGKPRGQPAG-SRGKRARKPGISGKSFLAIPGGNPVSLRGEIPGAN 788
G PG P G P+G S G ++P G+ +PG P G PG N
Sbjct: 720 GAPGSPAGSPSGTSAGNPQQQPPPPGQ----LPGQQPGQAGGR-PGLN 762
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 626 GLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPG----NPRGEPGFPPGGNPRGQLG 793
GL G P G +PGP RG GE G + + PG PRG PG P P G G
Sbjct: 891 GLPG--PPGLAGSPGP-RGPNGEPGDPGMDGDKGPPGPVDAGPRGPPGEPGPPGPFGAAG 947
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 617 IXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
I G L H +P P +G+ G T P P+G G P P+G +G
Sbjct: 165 IMGSLPNPHKEIMGSSPNPPKGIMGSTPNPPKGIMGSLPNPPKGIMGSTP-NPPKGIMG 222
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +2
Query: 596 PFGAWFRIXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGE-PGFPPGG 772
P G W R GG MG P G W RG G G + PG G G G
Sbjct: 20 PGGGWGRGQGGGMGRGPGGGW-----GRGSGGGWGRMQGGGMGRGPGGGWGRMQGGGMGR 74
Query: 773 NPRGQLG 793
P G LG
Sbjct: 75 GPGGGLG 81
>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 541 LVTGHWA*AXRISSGYLVPIWGMVPD*XGVNGKP 642
++T W A S+G+L PIW + P GV+ P
Sbjct: 129 ILTDVWCQARLFSTGFLSPIWVISPLPEGVSSLP 162
>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.3 bits (60), Expect = 7.6
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Frame = +2
Query: 545 LPAI-GXEXPE*APGTWFPFGAWFR--IXGGLMGSHPWGAWKTPGPTR--GLPGETGPET 709
LP + G + PE G P G + GG+ + P G + GP G PG+ GP
Sbjct: 5 LPGLNGIDGPEGERGQQGPIGMTGPPGLAGGVGANGPSGRGGSQGPPGPPGAPGQPGPRG 64
Query: 710 WNFREKFPGNPR-----GEPGFPPGGNPRGQLG 793
G GEPG G P+G G
Sbjct: 65 IKGPPGRAGGTGLMGYLGEPGVVGGAGPKGSSG 97
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 626 GLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEP----GFPP-GGNPRGQL 790
G+ WG PGP RG+ GP R P P G P G PP GG PRG +
Sbjct: 385 GMPPKEDWG----PGP-RGMGPGMGPP----RPMGPPGPHGPPFGPRGPPPHGGPPRGPM 435
Query: 791 G 793
G
Sbjct: 436 G 436
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = -1
Query: 787 LAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGP 650
+ PG+ P R G PPG P P F R P G PRG GP
Sbjct: 399 MGPGMGPPRPMG-PPG------PHGPPFGPRGPPPHGGPPRGPMGP 437
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,625
Number of Sequences: 59808
Number of extensions: 445126
Number of successful extensions: 1334
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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