Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0260.Seq
         (796 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    31   0.041
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.67 
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    25   2.0  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   8.2  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 31.1 bits (67), Expect = 0.041
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 665 PGPTRGLPGETGPETWNFREKFPG--NPRGEPGFPPGGNPRGQLGE 796
           PGP  G+PG+ G +  +     PG   PRG PG P     RG+ G+
Sbjct: 455 PGP-EGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQ 499



 Score = 29.9 bits (64), Expect = 0.095
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 665 PGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
           PG   G PG  GP+     E  P  P+G  GF      RGQ+G
Sbjct: 403 PGGGEGRPGAPGPKGPRGYEG-PQGPKGMDGFDGEKGERGQMG 444



 Score = 29.5 bits (63), Expect = 0.13
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 650 GAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGF--PPGGNPRGQLG 793
           GA   PG  RG PG  G +        PG P+GEPG   PPG  P G+ G
Sbjct: 604 GASGVPGE-RGYPGMPGEDGTPGLRGEPG-PKGEPGLLGPPG--PSGEPG 649



 Score = 25.0 bits (52), Expect = 2.7
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
 Frame = +2

Query: 680 GLPGETGPETWNFREKFPGNP------------RGEPGFPPGGNPRGQLG 793
           GL G++GP+    R+  PG P             G PG P    PRG  G
Sbjct: 374 GLKGQSGPKGEPGRDGIPGQPGIAGPAGAPGGGEGRPGAPGPKGPRGYEG 423



 Score = 24.6 bits (51), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 689 GETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLGE 796
           G TG  T    +   G+ RGEPG P     +GQ G+
Sbjct: 293 GATGTTTTTGPKGEKGD-RGEPGEPGRSGEKGQAGD 327



 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 792 PNWPRGFPPGGKPGSPRGLPG 730
           P  PRG+P  G+PG P GL G
Sbjct: 478 PQGPRGYP--GQPG-PEGLRG 495


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 665 PGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLGE 796
           PGP+  LPG +G +     +K    P G PG P   + +GQ GE
Sbjct: 280 PGPSC-LPGMSGEKG----DKGYTGPEGPPGEPGAASEKGQNGE 318



 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 680 GLPGETGPETWNFREKFPGNPRGEPGFPPGGN-PRGQLG 793
           G PGE G +      + P   +G PG PPG N P+G  G
Sbjct: 696 GAPGEKGQK--GETPQLPPQRKGPPG-PPGFNGPKGDKG 731



 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 677 RGLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
           RG PG  G   +   +   G P G PG+P    P+G+ G
Sbjct: 127 RGDPGLPGSLGYPGEKGDLGTP-GPPGYPGDVGPKGEPG 164



 Score = 23.4 bits (48), Expect = 8.2
 Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
 Frame = +2

Query: 551 AIGXEXPE*APGTWFPFGAWFRIXGGLMGSHPWGAWKTPGP-----TRGLPGETGPE-TW 712
           A G   P  APG   P G      G    S P G    PG        GLPG  G +   
Sbjct: 40  AQGNAGPPGAPGPVGPRGLTGH-RGEKGNSGPVGPPGAPGRDGMPGAPGLPGSKGVKGDP 98

Query: 713 NFREKFPGNPRGEPGFPPGGNPRGQLGE 796
                 P  P+G PG       RG +G+
Sbjct: 99  GLSMVGPPGPKGNPGLRGPKGERGGMGD 126



 Score = 23.4 bits (48), Expect = 8.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 680 GLPGETGPETWNFREKFPGNPRGEPGFPPGGNPRGQLGE 796
           G+PG  G +     E  P  P+G+ G P  G P G  GE
Sbjct: 320 GVPGLRGNDGIPGLEG-PSGPKGDAGVPGYGRP-GPQGE 356



 Score = 23.4 bits (48), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 677 RGLPGETG-PETWNFREKFPGNPRGEPGFPPGGNPRGQLG 793
           RG+PG  G P T        G+ +GEPGFP      G++G
Sbjct: 459 RGVPGSPGLPATV---AAIKGD-KGEPGFPGAIGRPGKVG 494


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 657 QAPQGWLPINPPLIRNHAPNGNQVPGAYSG 568
           Q+P G LP  PP   +    GN V G   G
Sbjct: 228 QSPYGALPETPPPAYSPPEEGNTVSGGQDG 257


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 794 PPIGPGDFPPEGNRVPP 744
           PP+ P +FP  GN +PP
Sbjct: 736 PPVPP-NFPRCGNHIPP 751


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,367
Number of Sequences: 2352
Number of extensions: 14941
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)