Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0260.Seq
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.20 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   10.0 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 792 PNWPRGFPPGGKPGSP 745
           PN  +G PPGG PG+P
Sbjct: 40  PNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 740 PRGEPGFPPGGNP 778
           P G PG PP  NP
Sbjct: 48  PGGPPGAPPSQNP 60


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 642 WLPINPPLIRNHAPNGNQVPGAYSG 568
           WL +   L  NH+PN +QV   Y G
Sbjct: 654 WLQVLA-LWLNHSPNYDQVTNWYMG 677


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  IIFYQFEIDNKNTLI 60
           I+ Y F+  NKN LI
Sbjct: 390 ILGYNFDFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  IIFYQFEIDNKNTLI 60
           I+ Y F+  NKN LI
Sbjct: 390 ILGYNFDFQNKNNLI 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,399
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)