Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0259.Seq
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    92   3e-20
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    89   3e-19
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    28   0.63 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   1.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 92.3 bits (219), Expect = 3e-20
 Identities = 43/81 (53%), Positives = 49/81 (60%)
 Frame = +2

Query: 8   KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 187
           KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH  KN
Sbjct: 7   KTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKN 66

Query: 188 KNFCPVLNLDKLWTLVSEQTR 250
             + P +NLD+LWTLV  +TR
Sbjct: 67  PLWRPTVNLDRLWTLVPNETR 87


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 41/81 (50%), Positives = 48/81 (59%)
 Frame = +2

Query: 8   KTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKN 187
           KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH  KN
Sbjct: 7   KTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKN 66

Query: 188 KNFCPVLNLDKLWTLVSEQTR 250
             + P +NLD+LWTL+  + R
Sbjct: 67  PLWRPTVNLDRLWTLLPNEAR 87


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 311 YPALTILMTGTLPSGADAYSASSVQRLMSKAYLSSKLDRNSCSF 180
           +P +TI MTG   SG    + +  Q L+ +   + +LD ++  F
Sbjct: 23  HPGMTIWMTGLSASGKSTIACALEQYLLQRGVTTYRLDGDNVRF 66


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 206 LNLDKLWTLVSEQTRLSMHLLQMARSP 286
           L++D LW + +E+TR  +H++     P
Sbjct: 27  LDIDDLWDIYNEKTRRMIHIISQRYKP 53


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 22/99 (22%), Positives = 42/99 (42%)
 Frame = -3

Query: 431 ADSTQAPPTSLIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADAYS 252
           A  T    +S I+ S+      + +      +  L SN    + + + T  +P+ + +  
Sbjct: 498 ATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVY 557

Query: 251 ASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQD 135
           ASS + L S +  SS    ++    S + SY+V  +  D
Sbjct: 558 ASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSD 596


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
 Frame = +2

Query: 161 MRNFHFRKNKNFCP-VLNLDKL-----WTLVSEQTRLSMHLL 268
           ++N HF KNK+  P +L +D L     W ++ +++ +S+ LL
Sbjct: 298 VKNLHFGKNKHTKPHLLVMDALSNLYVWKILQKRSEISVSLL 339


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 312  VSSFDNIDDGDLAIWS----RCILSLVCSETNVQSLSKFKTG 199
            V  +  IDDGDL ++     R ++S   +E ++Q LS   +G
Sbjct: 910  VEKYSYIDDGDLVVYEIAKRRKVVSKENAECDIQVLSASPSG 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,531
Number of Sequences: 5004
Number of extensions: 32026
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)