Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0259.Seq
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0027 + 16593133-16593573                                         92   2e-19
02_01_0563 + 4134954-4135388                                           92   2e-19
07_03_1250 - 25183375-25183815                                         91   6e-19
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361...    28   3.3  
03_05_0283 - 22694137-22694952                                         28   4.4  
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   5.8  
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790...    27   5.8  
07_03_0894 + 22362717-22363514                                         27   5.8  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   5.8  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   7.7  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    27   7.7  

>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 40/77 (51%), Positives = 48/77 (62%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH   
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLS 65

Query: 185 NKNFCPVLNLDKLWTLV 235
           N+  CP +N+++LW++V
Sbjct: 66  NRFHCPAVNVERLWSMV 82


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 40/77 (51%), Positives = 48/77 (62%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH   
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLS 65

Query: 185 NKNFCPVLNLDKLWTLV 235
           N+  CP +N+++LW++V
Sbjct: 66  NRFHCPAVNVERLWSMV 82


>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 39/77 (50%), Positives = 49/77 (63%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +
Sbjct: 6   RKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLR 65

Query: 185 NKNFCPVLNLDKLWTLV 235
           NK + P +N+++LW++V
Sbjct: 66  NKFYSPAVNVERLWSMV 82


>09_02_0052 -
           3616013-3616033,3616116-3616514,3617925-3618094,
           3619691-3620732
          Length = 543

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 294 IDDGDLAIWSRCILSLVCSETNVQSLSKF 208
           + DG+ A+  R  L ++C E NV  L KF
Sbjct: 153 LQDGNTAVKPRSQLVILCEEMNVNGLHKF 181


>03_05_0283 - 22694137-22694952
          Length = 271

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 311 YPALTILMTGTLPSGADAYSASSVQRLM 228
           YPA+++   GTL  G D Y+ S+   LM
Sbjct: 100 YPAVSLANDGTLVPGQDVYAISNQHSLM 127


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 116 FCDGAHHQHYHDLLDAYG 63
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>08_02_1146 +
           24678142-24678258,24678550-24678587,24678997-24679012,
           24679874-24680002,24680073-24680229,24680337-24680530,
           24680668-24680916,24681196-24681309,24681949-24681990,
           24682402-24682572,24682932-24683104,24683378-24683624,
           24684046-24684130,24684401-24684510,24684714-24684977,
           24685885-24685950,24686431-24686525,24686780-24686858
          Length = 781

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 279 GPRHQYCQSWILQVARQRQTPQTTCHS 359
           GP H     WI +  +Q   P+   HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284


>07_03_0894 + 22362717-22363514
          Length = 265

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
 Frame = -3

Query: 410 PTSLIFFSADFEKNFAFTMTG---CLGS----LPLPSNL*YPALTILMTGTLPSGADAYS 252
           PT +   +ADF++ FA    G   CL      LP        A+T  + G+ P+G  AY+
Sbjct: 115 PTLVDTATADFDRTFAVNTRGAFLCLREAAHRLPRGGGGRIVAITSSVVGSHPTGYSAYT 174

Query: 251 AS-----SVQRLMSKAYLSSKLDRN 192
           AS     ++ R M+K    +++  N
Sbjct: 175 ASKAAVEAMVRTMAKELKGTRITAN 199


>02_02_0525 -
          11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 99 PPALPRPPGCLRCFPIRPCP 40
          PPA P PP  L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 102 SPP-ALPRPPGCLRCFPIRPCP 40
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 288 HQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWC 416
           H Y  S ILQ   QR +      +   V + I    N+G  WC
Sbjct: 437 HTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,256
Number of Sequences: 37544
Number of extensions: 228005
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)