Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0259.Seq
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   110   4e-25
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    43   1e-04
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    28   3.0  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    28   3.0  
Z70287-5|CAB54288.1|   78|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   6.9  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   6.9  
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  110 bits (265), Expect = 4e-25
 Identities = 45/82 (54%), Positives = 58/82 (70%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR FH  K
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65

Query: 185 NKNFCPVLNLDKLWTLVSEQTR 250
           N+++CP +N+++LW+LV ++ R
Sbjct: 66  NQHYCPTVNVERLWSLVPQEVR 87



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +1

Query: 265 APDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 432
           A  GK PVI+  K            P+ P+IV                GGACVL A
Sbjct: 90  ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +2

Query: 161 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTR 250
           MR FH  KN+++CP +N+++LW+LV ++ R
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVR 30



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +1

Query: 265 APDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 432
           A  GK PVI+  K            P+ P+IV                GGACVL A
Sbjct: 33  ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 407
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 407
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 96  PALPRPPGCLRCFPIRPCP 40
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 407
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 407
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z70287-5|CAB54288.1|   78|Caenorhabditis elegans Hypothetical
           protein R09E10.8 protein.
          Length = 78

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 143 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLSMHLLQMARSP-SSILSKLDTTS 319
           +F  L   N  F++  N+C  + + K W +  +  R +   L MA +    I++  D  S
Sbjct: 9   FFALLVGSNAQFQQFCNYCGFIEVPKTWPVAQDSLRSACETLGMATTACKGIINSADLNS 68


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +2

Query: 95  GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 226
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 211 VQNWTEILVLSKVEISHTKFAKVSR 137
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 134 HPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLSMHLLQMARSPSSILSKLDT 313
           H G FGK  +   H   NK       L ++       T  S+HLL +A +   I+     
Sbjct: 670 HQGTFGKNNILQLHVNNNK-------LSRIPLEALSSTMASLHLLDLAHNNIKIVDSSQL 722

Query: 314 TS 319
           TS
Sbjct: 723 TS 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,004
Number of Sequences: 27780
Number of extensions: 191004
Number of successful extensions: 542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)