Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0258.Seq
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   5.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   7.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.9  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 625 SGLKRXGCWQIGRLTVSRDXXXXXXX*TAERAVVVTR 515
           SGLK  GC++   LT+ R         T ER V   R
Sbjct: 273 SGLKSRGCYETPGLTILRTAHMDLEGLTMEREVRALR 309


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
 Frame = +2

Query: 260 PRKLDFSNLDDDDGIRDESQAP-------VSHSPPYK--RVRALRLFDSPH 385
           P  +D SNL+  + + +E Q+P       V    PY   R+ AL LF   H
Sbjct: 613 PLAVDLSNLESKEAVSEEIQSPQRLSRSKVFRKDPYSCVRILALELFCCSH 663


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 675 NSGPWGRARPRSKPGAKKNLKGDSNI 752
           NSG   + + + KP AKKN++  +N+
Sbjct: 29  NSGTKKKNKKKKKPKAKKNVETQANV 54


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 242 DTSVLVPRKLDF---SNLDDDDGIRDESQAPVS 331
           D + L P KL F   SN+D +D   D S  PVS
Sbjct: 197 DPNSLSPTKLSFLSTSNIDPEDLTEDNSILPVS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,974
Number of Sequences: 5004
Number of extensions: 74502
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)