Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0258.Seq
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0727 - 22564183-22564815,22564906-22565073,22565264-225653...    30   2.0  
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    30   2.6  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    29   4.5  
03_01_0345 - 2708483-2709346                                           29   6.0  

>12_02_0727 -
           22564183-22564815,22564906-22565073,22565264-22565382,
           22565796-22565898,22566702-22566974,22567088-22567279,
           22568289-22568615
          Length = 604

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 266 KLDFSNLD-DDDGIRDESQAPVSHSPPYKRVRALR-LFDSPHTPKTLLEKCSTPTHHPP 436
           +LD    D DDD  R E++  ++ +   + V  L  L D+PH P +  +    P  +PP
Sbjct: 464 ELDLQESDNDDDTDRGENEPALNETDEDQAVELLETLTDNPHEPSSSSQSQDPPQLYPP 522


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 459 RSTCKQECHQARATTFHR-HLVTTTARSAVYPPDELDESRLTVRRPICQHPXLFRPDWSS 635
           R    +     R  +FH+ H    T+RS+    DEL   +  +R+P+C +     PD+SS
Sbjct: 267 RKVISRNSENDRVASFHKQHDKRPTSRSS---KDELPSQKKHIRKPVCTNGE--EPDFSS 321

Query: 636 G*NKKEN 656
             +  EN
Sbjct: 322 HRDSVEN 328


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 328 ISQPTL*ESQSLEVVRQSSHSKDALREVFDTDSSSAQDETVPAQDQRA 471
           + +P L +SQ  +++R  S S  A     + DS SA DETVP+  + A
Sbjct: 369 VLKPGLVKSQEPKILRSPSSSSTAADS--EDDSMSAVDETVPSSRRLA 414


>03_01_0345 - 2708483-2709346
          Length = 287

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 512 AVEGGGSSLMAF-LFAR*SWAGTVSSWADDESVSNTSLRASLECEDCRTTS 363
           AV+ G ++  AF   A  S  G  +S+A DESV  +S     +CED ++ +
Sbjct: 230 AVDDGHAAAAAFEAAAESSSCGMAASFAADESVWRSSSSGYQDCEDLQSVA 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,036,720
Number of Sequences: 37544
Number of extensions: 587789
Number of successful extensions: 1631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)