Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0258.Seq
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07540.1 68416.m00900 formin homology 2 domain-containing pro...    31   1.2  
At5g59170.1 68418.m07416 proline-rich family protein contains pr...    29   3.8  
At4g17870.1 68417.m02664 expressed protein                             28   8.7  

>At3g07540.1 68416.m00900 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 841

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 376 QSSHSKDALREVFDTDSSSAQDETVPAQDQRANRNAIRLEPPPSTA 513
           Q+SH KD  + +  +D S +Q +T+P    R N    +L   PST+
Sbjct: 129 QTSHFKDESKSLA-SDISQSQQQTLPCPPPRNNNTQNKLSVAPSTS 173


>At5g59170.1 68418.m07416 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 288

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 323 PVSHSPPYKRVRALRLFDSPHTPKTLLEKCSTPTHHPPRTRLFPPK 460
           P  +SPP+K+      +  P      ++K   P H+PP  + +PP+
Sbjct: 130 PEQYSPPFKK------YPPPEQYPPPIKKYPPPEHYPPPIKKYPPQ 169


>At4g17870.1 68417.m02664 expressed protein
          Length = 191

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 272 DFSNLDDDDGIRDESQAPVSHSPPYKRVRALRLFDSPHTPKTLLEKCS 415
           +F     D G      A   H+PP      +R FD P T K  ++ CS
Sbjct: 19  EFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCS 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,101
Number of Sequences: 28952
Number of extensions: 436794
Number of successful extensions: 1121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)