Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0257.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    27   2.0  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    27   3.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   6.0  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   7.9  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/71 (23%), Positives = 36/71 (50%)
 Frame = -1

Query: 299 SNRAQFFMVHRMLQSSHPHDLQVFLQACETNPGHSSGQLSQGLPSDTSFIRTPVSENAPF 120
           SNR+     + + ++++    +V +     N   S   L+  LP+  S+ ++    NA  
Sbjct: 65  SNRSSLVPTYPVDENANKLPPKVSIAFILINSLMSDMSLAVALPTSASYTQSLGGTNAFS 124

Query: 119 GLLVGVPFILS 87
           GL++G+P ++S
Sbjct: 125 GLVIGIPTLIS 135


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 215 ETNPGHSSGQLSQGLPSDTSFIRTPVSENA 126
           +T P H +   S  LPSD S I+TP ++ A
Sbjct: 41  QTLPIHQNQAFSNILPSDFSIIKTPETKTA 70


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 318 DSRVNHHSYDSPP-GLTAKQTELYWQSLAERT 410
           D +V+ H YD+PP GL   +T +Y   L   T
Sbjct: 163 DGKVSCHLYDAPPSGLVEGRTSMYTLLLQNTT 194


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 6/149 (4%)
 Frame = -1

Query: 458 PSTPRR--LTSGATCTSRSTLSERLPVQLGLLSGESGRTVIGVMVDSRVAESESVSNRAQ 285
           P  P R  L S     ++    +R+P QL   +       +   +D+      S+S+ + 
Sbjct: 284 PDAPERSLLVSKQKNITKLNNEKRIPPQLAQPTSH-----VPSFIDTNSPSMPSISSVSS 338

Query: 284 FFMVHRM--LQSSHPHDLQVFLQACETNPGHS-SGQLSQGLP-SDTSFIRTPVSENAPFG 117
           +   HR+  L +S+   L       +T+   S +G  S  +  SDT+ + TP+S+    G
Sbjct: 339 YQQQHRIPKLNASNYSPLLSPSSHRKTSGNLSRTGSESSAVSLSDTTNLNTPISDIPSPG 398

Query: 116 LLVGVPFILSPVINNQTKRPTNRMPQNFF 30
                  + SP I  +++ P   +P   F
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPF 427


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 671 SKCXRFLNRTYCSQC-IPAEIHDVD*RYRYQEQFHSWRR 558
           S C R L+RTY   C I  + HD+  R +   +  + RR
Sbjct: 324 SNCYRALDRTYVQNCRIKLKFHDIPSRTKEDGKKSAVRR 362


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 299 SNRAQFFMVHRMLQSSHPHDLQVFLQACETNPGHSSGQLSQGLPSDTS 156
           S  + F   HR +  S P DL +      T+P  S GQ+ Q  P+D S
Sbjct: 286 SRTSSFSSKHRSVTFSPP-DLAILFDPSITSPSSSVGQIPQ--PTDHS 330


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 338 VMVDSRVAESESVSNRAQFF 279
           + VD  V ESES SNR Q F
Sbjct: 591 ISVDEAVGESESFSNRQQDF 610


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 147 HTRLRKCTFRPSGWSSIHPVSR-DQQSNKTTD 55
           H RL  C+ R S WS++  +S    + N+ TD
Sbjct: 272 HQRLVSCSDRNSQWSTVDSLSNTSYKKNRYTD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,022
Number of Sequences: 5004
Number of extensions: 59321
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)