Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0257.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 35 0.071
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 30 1.5
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 30 2.0
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506... 29 4.7
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 29 4.7
09_06_0074 - 20693840-20694271 28 8.2
08_02_1181 - 24985963-24986242,24987109-24987197 28 8.2
04_04_0663 + 27058470-27059033,27059355-27059972 28 8.2
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 28 8.2
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 143 PVSENAPFGLLVGVPFILSPVINN-QTKRPTNRMPQNFFTDTCGIHCR 3
PV FGL +GVP+ I+ T NR+P+ FF+ C + R
Sbjct: 1268 PVENQHFFGLRLGVPYFFGEFISTGSTAEFANRIPKEFFSSECMVSSR 1315
>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = -2
Query: 259 NRHTRMTCRSFSKRVRRIRGTALDSCRKVFPLILLLSAHPSQKMHLSAFWLEFHSSCLP* 80
+RHT++ + K+ +++RG L+ K+ P++ + M +S W E++++ P
Sbjct: 939 SRHTKLAIK---KKSQQMRGENLNPSAKMGPILRKKLMRATTTMLISKIWGEYYATYFPG 995
Query: 79 STIKQNDR 56
T K+ D+
Sbjct: 996 DT-KEEDQ 1002
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = -1
Query: 248 PHDLQVFLQACETNPGHSSGQLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILSPVINNQ 69
P DL V LQ N +GQL S T + +S N L GV L P + N
Sbjct: 48 PEDLPVTLQHMSLNDNQLNGQLPDAFGSLTGLVNLDISSNN----LTGV---LPPSMKNL 100
Query: 68 TKRPTNRMPQNFFT 27
+ T + N F+
Sbjct: 101 SSLTTLNIENNLFS 114
>12_01_0613 +
5060150-5060320,5062255-5062359,5064057-5064143,
5064265-5064318,5064402-5064547,5064651-5064804,
5064891-5065028,5065454-5065527,5065615-5065756,
5066396-5066474,5067326-5067423
Length = 415
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -1
Query: 467 PSTPSTPRRLTSGATCTSRSTLSERLPVQLGLLSGESGRTVIGVMVDSRVAESESVSNRA 288
P+ P P L A C S SER VQL LL+ SG I V+ S V + +
Sbjct: 82 PANPYVP--LLLNAACDETSEKSERAFVQL-LLTSASGNNNIEVLKQSAVDYINGSDSAS 138
Query: 287 QFFMVHRMLQ 258
Q + L+
Sbjct: 139 QALLPREQLE 148
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 167 REDLATTVQSCAPDSSHTL-GERPASHAGVTIEAFG 271
R D T +S +P +S TL G+ PA+ +EA+G
Sbjct: 49 RPDGEATTESSSPSASRTLAGDEPAAAGAGEVEAYG 84
>09_06_0074 - 20693840-20694271
Length = 143
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 583 KSNFIPGGDEIFILLAVAFVDVLAMSNVRSCFGNWEAKALVRQAR 449
++N++ G + +L+AVAF+ ++ M + F W A L+ Q R
Sbjct: 90 ENNYLNGA--LAVLVAVAFIVIIPMIILLYEFHRWRANMLMAQTR 132
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 147 HTRLRKCTFRPSGWSSIHPVSR-DQQSNKTTDQSDATKLFHGHLWNT 10
H RL CTF+ ++I + + Q++ TTD KL + H+W++
Sbjct: 24 HKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL-NKHIWSS 69
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 206 PGHSSGQLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILSPVINNQTKRPTNRMPQ 39
P QLS +P T ++T ++N P + ++ P NQT P N++PQ
Sbjct: 121 PQSVQNQLSTQIPQSTQTLQT--TQNLPS---IQTQQLIQPQFYNQTHFPQNQIPQ 171
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 204 RIR-LTRLEKDLQVMRV*RL--KHSVYHEELGSVRDRLGLRDSRVNHHSYDSPPGLTAKQ 374
R+R ++R EKD ++ K VY E S D L L+ R H +DS T Q
Sbjct: 211 RLRPMSRKEKDAGSRSCVKIVNKKDVYLTEFASETDYLRLKRVRGRHFCFDSSFPDTTTQ 270
Query: 375 TELY 386
E+Y
Sbjct: 271 AEVY 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,169,537
Number of Sequences: 37544
Number of extensions: 430026
Number of successful extensions: 1239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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