Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0257.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 42 5e-04
SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03) 33 0.17
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 31 0.90
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34) 31 1.2
SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23) 29 2.7
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 29 4.8
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 4.8
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037) 29 4.8
SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 6.3
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 28 6.3
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 166 EGRPCDNCPELCPGFVSHAWRKTCKSCGC 252
EG C C +C GF H WRK C SC C
Sbjct: 30 EGNKCLQCGNICRGFSVHPWRKFCNSCKC 58
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 509 HCKHIDEGHRKQYEDFVAARNEIALDIGIASQHHGSPLECIGCN 640
HCK + + +DF R + AL +G P C CN
Sbjct: 154 HCKKLTLDQKMAMDDFCEKRIKTALGVGAVRACMAQPSTCKRCN 197
>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
Length = 407
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 178 CDNCPELCPGFVSHAWRKTCKSCGCDD*SIRCTMKNWARFETDSDSATLESTI--TPMTV 351
CD P+ C RKT CD S++C +WA + +AT TI T +TV
Sbjct: 191 CDGLPQTCSQQPEVENRKTM----CDCKSVKCDWNDWAAWSKTCGNATRTRTIKSTQVTV 246
Query: 352 RPDSPLSRPS-CT 387
+ D P+ CT
Sbjct: 247 QSDDCSKVPTVCT 259
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/79 (25%), Positives = 29/79 (36%)
Frame = +1
Query: 154 KEVSEGRPCDNCPELCPGFVSHAWRKTCKSCGCDD*SIRCTMKNWARFETDSDSATLEST 333
K+ E CD P+ C R T SC +I+C +W + T T
Sbjct: 63 KKTVEALSCDGLPQTCTQAPETDSRTTMCSCN----TIKCVWNDWTVWSASCGRVTRTKT 118
Query: 334 ITPMTVRPDSPLSRPSCTG 390
I V + +P+C G
Sbjct: 119 IKAEKV----VVEKPTCDG 133
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 GRPCDNCPELCPGFVSHAWRKTCKSC-GCDD*SIRCTMKNWARFETDSDSATLESTITPM 345
GR CD C GF S C +C GC ++ MKN +TD + + +T
Sbjct: 277 GRACDKCQIYFTGFTSSG----CVACPGC----VKALMKNVKETDTDVNQSVAIATGLDA 328
Query: 346 TVRPDSPLSR 375
+ PLS+
Sbjct: 329 LTKTQEPLSK 338
>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
Length = 621
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 509 HCKHIDEGHRKQYEDFVAARNEIALDIG 592
+C ++ + R++ EDF A RN+ AL +G
Sbjct: 237 YCDNLSDAERQKMEDFCAMRNQDALGVG 264
>SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 163 SEGRPCDNCPELCPGFVSHAWRKTCKS 243
S G C CP CP +HA+RK C++
Sbjct: 275 SPGECCXGCPR-CPSGATHAFRKGCET 300
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 54 GRSFCLIVDHGRQDEWNSNQKAERCIF 134
G+ C + GR D+W ERC+F
Sbjct: 3053 GQRLCNVFPDGRYDDWVGKSCTERCVF 3079
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 260 QSSHPHDLQVFLQACETNPGHSSGQLSQGLPSDTSFIRTPVSEN 129
+S HP +V N +SSG S G P+ S IR ++ N
Sbjct: 471 RSVHPLHSKVHAAGPSPNSDNSSGAASTGFPASRSSIRVEIANN 514
>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
Length = 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 184 NCPELCPGFVSHAWRKTCKSCGCDD 258
NC GF +A KTC++C C D
Sbjct: 110 NCQWCVSGFHGNATAKTCQACNCTD 134
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 509 HCKHIDEGHRKQYEDFVAARNEIALDIGIASQHHGSPLECIGCN 640
HCK + + +DF R + AL +G P C CN
Sbjct: 41 HCKKLTLDQKMAMDDFCEKRIKTALGVGAVRACMAQPSTCKRCN 84
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 273 YHEELGSVRDRLGLRDSRVNHHSYDSPPGLTAKQTELYWQSLAERTP 413
+H+ GS R L D + H + PP TA++T W L+ P
Sbjct: 349 HHQTTGSRSRRHVLSDDALLHTAPARPPFSTAQRTHRSWDPLSNTLP 395
>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
Length = 1235
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 251 HPHDLQVFLQACETNPGHSSGQLSQGLPSDTSFIRTPV 138
HP D Q + +T+PGH + + G PSD+ F T V
Sbjct: 601 HPSDSQFQVTDVKTSPGHP--RSAYGHPSDSQFQETDV 636
>SB_26227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 485 TKAGSYIGHCKHIDEGHRKQYEDFVAARNEIA 580
TKAG + G C H DE R + FVA ++++
Sbjct: 491 TKAGDFGGQCDHTDEPSR-DIDKFVAKNHDLS 521
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 178 CDNCPELCPGFVSHAWRKTCKSCGC 252
CD PE+CP V W + +SCGC
Sbjct: 848 CDKAPEVCP--VGKYWSQ--RSCGC 868
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 467 PSTPSTPRRLTSGATCTSRSTLSERLPVQLGLLSGESGRTVI 342
P P+TP S S ERLPV ++SG+ TV+
Sbjct: 399 PIAPATPTHRRIVPLMPSVSNADERLPVITAVMSGQGAPTVM 440
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 437 TSGATCTSRSTLSERLPVQLGL 372
+SGA C++++TL E L V LGL
Sbjct: 495 SSGAWCSAKNTLGEYLQVDLGL 516
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 154 KEVSEGRPCDNCPELCPGF--VSHAWRKTCKSCGCD 255
K+ ++GR CD C PGF + + C +CGC+
Sbjct: 530 KQYTQGRQCDACK---PGFYDLKSSHSTGCVTCGCN 562
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,078,127
Number of Sequences: 59808
Number of extensions: 498553
Number of successful extensions: 1770
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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