Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0257.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.52 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 162 YFFYPHTRLRKCTFRPSGWSSIHPVSRDQQSNKTTDQS 49
           Y  Y HT  +K     S   S  P SRD+ +   T ++
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKT 104


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 572 HSWRRRNLHIACGGLRRCACNVQ 504
           H  R   +H++ G   R AC +Q
Sbjct: 193 HRQRHSTIHLSTGNYSRLACEIQ 215


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 449 ACLAY*GLSF-PITK--AGSYIGHCKHIDEGHRKQYEDFV 559
           ACL+  G  + P  K   G+ + H      GHRK YE +V
Sbjct: 134 ACLSTGGSCYWPRGKNLGGTTLHHGMAYHRGHRKDYERWV 173


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 148 RIKEVSEGRPCDNCPELCPGFVSHAWRKT 234
           +++++  G P +N  E C    +HA  KT
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEKT 536


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 194 SCAPDSSHTLGERPASHAGVTIEAFGVP 277
           S A  SS +   RPAS    T+   G P
Sbjct: 831 SAAATSSTSTSPRPASSTAATLVLSGCP 858


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 101 PFILSPVINNQTKRPTN 51
           P +LSP +NN    PT+
Sbjct: 194 PRVLSPPLNNNDATPTD 210


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 482 ITKAGSYIGHCKHIDEGHRKQYEDFVAARNEIALDIGI-ASQHHGSPLECIGCNKF 646
           +++ GS  G+        RK+       + E+ L  G  AS +H + L C GC  F
Sbjct: 155 LSQPGSLNGYGSSDGCDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGF 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 294  PSPVLHGTPNASIVTP 247
            PSP + G PN   + P
Sbjct: 1171 PSPFMAGAPNVPTILP 1186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,731
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)