Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0257.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18550.1 68414.m02314 kinesin motor protein-related contains ...    29   2.2  
At3g12530.1 68416.m01559 DNA replication protein-related similar...    29   3.9  
At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine...    28   5.2  
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ...    28   6.8  
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim...    27   9.0  
At3g08670.1 68416.m01007 expressed protein                             27   9.0  
At3g08620.1 68416.m01001 KH domain-containing protein                  27   9.0  
At2g20010.1 68415.m02339 expressed protein                             27   9.0  

>At1g18550.1 68414.m02314 kinesin motor protein-related contains
           similarity to kinesin-related protein GI:4493964 from
           [Plasmodium falciparum]
          Length = 799

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 261 KHSVYHEELGSVRDRLGLRDSRVNHHSYDSPPGLTAKQTELY 386
           K  VY  E  +  D L L+  RV H ++DS    T  Q E+Y
Sbjct: 179 KRDVYLTEFTNENDYLRLKRLRVRHFTFDSSFPETTTQQEVY 220


>At3g12530.1 68416.m01559 DNA replication protein-related similar to
           DNA replication protein Psf2 (GI:29365481) [Xenopus
           laevis]; contains Pfam profile PF04128: Domain of
           unknown function (DUF392)
          Length = 191

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 141 RLRKCTFRPSGWSSIHPVSRDQQSNKTTDQS 49
           R  KCTFRP GW S+  +++  ++ + +  +
Sbjct: 46  RRGKCTFRPPGWMSVDNLTQILEAERESQST 76


>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine
           deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 298

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = -1

Query: 470 GPSTPSTPRRLTSGATCTSRSTLSERLPVQLGLLSGESGRTVIGVMVDSRVAESESVSNR 291
           GP  P T   L + A   +++  S+   V +G   G SGRT +GV V+          + 
Sbjct: 20  GPFEPETLLPLINRALPLAQALPSQSPLVAVG--RGSSGRTFLGVNVELPGLSPLHSIHA 77

Query: 290 AQFFMVHRMLQS 255
            QF +VH  L +
Sbjct: 78  GQFLVVHLALNN 89


>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 456

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 94  MNGTPTRRPKGAFSETGVRIKEVSEGRPCDNC-PELCPGFVSHAWRKTCKSC 246
           + GT    P  +FS+T   + EVS+   C  C  ++C   V     + C  C
Sbjct: 291 LKGTAYSLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQC 342


>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
           similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
           {Clostridium acetobutylicum}; contains Pfam profiles
           PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
           DNA gyrase C-terminal domain beta-propeller
          Length = 950

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   VRQCIPQVSVKKFCGIRLVGRFV*LLITGDRM 96
           V  CI +VS+K F GIR  G     L +GD +
Sbjct: 713 VNGCIKKVSLKLFSGIRSTGIIAIQLNSGDEL 744


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 206 PGHSSGQLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILSPVINNQTKRPTNRMPQN 36
           PG SS  + +  PS +S   TP S      L    P I++   N++   PT R P +
Sbjct: 226 PGSSSSSMDKARPSLSSRPSTPTSRPQ---LSASSPNIIASRPNSRPSTPTRRSPSS 279


>At3g08620.1 68416.m01001 KH domain-containing protein 
          Length = 283

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 164 DTSFIRTPVSENAPFGLLVGVPFILSPVINNQTKRPTNRMPQNFFTD 24
           D+ +I   ++E+   G  + V  I S ++N +  R T  MP   FTD
Sbjct: 28  DSQYISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTD 74


>At2g20010.1 68415.m02339 expressed protein
          Length = 834

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 584 QEQFHSWRRRNLHIACGGLRRCAC 513
           QE++ SW+RRNL +   GL    C
Sbjct: 48  QEEYESWQRRNLKLLEAGLILYPC 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,119
Number of Sequences: 28952
Number of extensions: 329120
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)