Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0256.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical... 41 6e-04
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 37 0.009
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 37 0.009
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 35 0.038
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 33 0.12
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr... 32 0.27
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 31 0.47
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 28 5.8
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 28 5.8
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 27 7.7
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 27 7.7
>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
protein Y48G8AL.1 protein.
Length = 1019
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = -2
Query: 444 TRPTLKCYXTFGASXHSLPLEXKRKLLQFTTGSDRVPVGGLCNLNFVIAXNGPDCDXLPT 265
+ PT++ F + +L + +RK LQF TGS R+PV G L+ I + P + LP
Sbjct: 929 SHPTIQA---FWKAFFALTDDERRKFLQFLTGSTRIPVSGWEELHAAIQPSAP--ESLPV 983
Query: 264 AHT 256
AHT
Sbjct: 984 AHT 986
Score = 29.1 bits (62), Expect = 2.5
Identities = 28/124 (22%), Positives = 46/124 (37%)
Frame = -1
Query: 532 QPGKKLKCCLWKQVFDFHELEKSTEYDGAYASDSXMLQXFWGIVXQLXXXXXXXXASVHD 353
QP + + + + +D++E Y G Y+S +Q FW L
Sbjct: 897 QPCELKEMIVGNENYDWNEFRDILMYRGEYSSSHPTIQAFWKAFFALTDDERRKFLQFLT 956
Query: 352 RVGPGARGRAVQLELCDREXRPGLRPASHRAHFFNVLLLPEYDTRDKLQDRLLKAINYSK 173
+L + P P +H FN+L LP +L RL +I +++
Sbjct: 957 GSTRIPVSGWEELHAAIQPSAPESLPVAHTC--FNLLDLPNIADDVELLRRLRISIEHTE 1014
Query: 172 GFGL 161
GF L
Sbjct: 1015 GFTL 1018
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 507 VCGSRFSISTSWKSRQNTMART-RPTLKCYXTFGASXHSLPLEXKRKLLQFTTGSDRVPV 331
+CG + W+ +NT+ R P K F SL E + +LLQF TG+ RVPV
Sbjct: 671 LCGMQDVDVDDWQ--RNTVYRHYAPQSKQVTWFWQWVRSLDQEKRARLLQFVTGTCRVPV 728
Query: 330 GGLCNL 313
GG L
Sbjct: 729 GGFSEL 734
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 319 QLELCDREXRPGLRPASHRAHFFNVLLLPEYDTRDKLQDRLLKAINYSKGFG 164
QL +R + P SH FN L LP Y + D+L ++L AI ++GFG
Sbjct: 741 QLFCIERVGKENWLPRSHTC--FNRLDLPPYRSYDQLVEKLSMAIEMTEGFG 790
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 507 VCGSRFSISTSWKSRQNTMART-RPTLKCYXTFGASXHSLPLEXKRKLLQFTTGSDRVPV 331
+CG + W+ +NT+ R P K F SL E + +LLQF TG+ RVPV
Sbjct: 673 LCGMQDVDVDDWQ--RNTVYRHYAPQSKQVTWFWQWVRSLDQEKRARLLQFVTGTCRVPV 730
Query: 330 GGLCNL 313
GG L
Sbjct: 731 GGFSEL 736
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 319 QLELCDREXRPGLRPASHRAHFFNVLLLPEYDTRDKLQDRLLKAINYSKGFG 164
QL +R + P SH FN L LP Y + D+L ++L AI ++GFG
Sbjct: 743 QLFCIERVGKENWLPRSHTC--FNRLDLPPYRSYDQLVEKLSMAIEMTEGFG 792
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -2
Query: 414 FGASXHSLPLEXKRKLLQFTTGSDRVPVGGLCNL-------NFVIAXNGPDCDXLPTAHT 256
F + S E K K LQF TG+ +VP+ G +L F I + D LP AHT
Sbjct: 4084 FWRALRSFEKEDKAKFLQFVTGTSKVPLQGFASLEGMNGVQKFSIHMDSRGGDRLPAAHT 4143
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = -2
Query: 507 VCGSRFSISTSWKSRQNTMARTRPTLKCYXTFGASXHSLPLEXKRKLLQFTTGSDRVPVG 328
+CG + WK+ P+ + F S E + ++LQF +G+ RVP+
Sbjct: 601 MCGLQKIDVKDWKANTIYKGGYGPSSQVVHNFWKCILSFDNEMRARVLQFVSGTSRVPMN 660
Query: 327 GLCNL-------NFVIAXNGPDCDXLPTAHT 256
G L F I G D LP AHT
Sbjct: 661 GFRELYGSNGLQKFTIERWG-SADMLPRAHT 690
>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical protein
D2085.4 protein.
Length = 1001
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 250 NVLLLPEYDTRDKLQDRLLKAINYSKGFGL 161
N+L +P+Y R KL+++L AIN GF L
Sbjct: 971 NMLRIPKYSNRTKLEEKLRYAINSGAGFEL 1000
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 31.5 bits (68), Expect = 0.47
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = -2
Query: 576 FLEGXRLRIPLGTF--FSPERS*NAVCGSRFSISTSWKSRQNTMARTRPTLKC------Y 421
F +G PL T +SPE + G + W SR + + T P L +
Sbjct: 2616 FRDGFDRVFPLRTLRAYSPEEVQRLLSGEQ---CPEW-SRDDILNYTEPKLGYTRESPGF 2671
Query: 420 XTFGASXHSLPLEXKRKLLQFTTGSDRVPVGGLCNLN 310
F +L + ++ LQF TG +P GGL NL+
Sbjct: 2672 LRFVDVMEALTAQERKNFLQFATGCSSLPPGGLANLH 2708
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -1
Query: 244 LLLPEYDTRDKLQDRLLKAINYSKGFGLH 158
L LPEY + L++RLL AIN KGF L+
Sbjct: 2734 LKLPEYSSSAILRERLLTAIN-EKGFHLN 2761
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 253 FNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 161
FN+L LP Y+ + L ++L AI+ GF L
Sbjct: 1035 FNLLKLPNYNKKSLLLEKLRYAIHAGTGFEL 1065
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 253 FNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 161
FN+L LP Y+ + L ++L AI+ GF L
Sbjct: 624 FNLLKLPNYNKKSLLLEKLRYAIHAGTGFEL 654
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -1
Query: 352 RVGPGARGRAVQLELCDREXRPGLRPASHR 263
RV P ++ ++Q+ + D + +PG+ PA+++
Sbjct: 6 RVSPNSQSESLQILVNDEDLQPGMPPATYQ 35
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -1
Query: 352 RVGPGARGRAVQLELCDREXRPGLRPASHR 263
RV P ++ ++Q+ + D + +PG+ PA+++
Sbjct: 6 RVSPNSQSESLQILVNDEDLQPGMPPATYQ 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,375,190
Number of Sequences: 27780
Number of extensions: 198684
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -