Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0256.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    28   0.080
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 244 LLLPEYDTRDKLQDRLLKAINYSKGFGLH*SYA 146
           +L P  D+RD+L  R L+A+N      +H S A
Sbjct: 417 VLFPSLDSRDELHPRELEAVNLGSACRIHGSPA 449


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 431 RVGRVRAIVFCRLFQL 478
           RV  VRA  +C LF L
Sbjct: 531 RVASVRAETYCNLFSL 546


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 431 RVGRVRAIVFCRLFQL 478
           RV  VRA  +C LF L
Sbjct: 499 RVASVRAETYCNLFSL 514


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 473  QLVEIENLLPQTAFQL 520
            QL+ +ENLL Q   +L
Sbjct: 1125 QLISVENLLAQKGLKL 1140


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 371 SCFSSRPGRTG 339
           +C SSRPG+ G
Sbjct: 173 ACISSRPGQCG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,593
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)