BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesV0256.Seq (598 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 43 2e-04 At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 40 0.002 At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 34 0.063 At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 29 1.8 At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 1.8 At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 29 2.4 >At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly identical to ubiquitin-protein ligase 1 [Arabidopsis thaliana] GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from [Arabidopsis thaliana] Length = 3891 Score = 42.7 bits (96), Expect = 2e-04 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 10/118 (8%) Frame = -1 Query: 487 DFHELEKSTEYDGAYASDSXMLQXFWGIVXQLXXXXXXXXASVHDRVG--PGARGRAVQ- 317 DF +L+ +TEY +Y + S ++ FW +V P +A+Q Sbjct: 3775 DFDDLKANTEYT-SYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQG 3833 Query: 316 ------LELCDREXRPGLRPASHRAHFFNVLLLPEYDTRDKLQDRLLKAIN-YSKGFG 164 L++ P P++H FN L LPEY ++++LQ+RLL AI+ S+GFG Sbjct: 3834 ISGPQRLQIHKAYGAPERLPSAHTC--FNQLDLPEYQSKEQLQERLLLAIHEASEGFG 3889 >At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly identical to ubiquitin-protein ligase 2 [Arabidopsis thaliana] GI:7108523; E3, HECT-domain protein family; similar to ubiquitin-protein ligase 2 GI:7108523 from [Arabidopsis thaliana] Length = 3658 Score = 39.5 bits (88), Expect = 0.002 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%) Frame = -1 Query: 487 DFHELEKSTEYDGAYASDSXMLQXFWGIVXQLXXXXXXXXASVHDRVG--PGARGRAVQ- 317 DF +L+ +TEY +Y S +++ FW +V P +A+Q Sbjct: 3542 DFDDLKANTEYT-SYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQG 3600 Query: 316 ------LELCDREXRPGLRPASHRAHFFNVLLLPEYDTRDKLQDRLLKAIN-YSKGFG 164 L++ P P++H FN L LPEY +++++Q+RLL AI+ ++GFG Sbjct: 3601 ISGPQRLQIHKAYGSPERLPSAHTC--FNQLDLPEYQSKEQVQERLLLAIHEANEGFG 3656 >At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiquitin-transferase family protein / armadillo/beta-catenin-like repeat-containing protein similar to SP|Q14669 Thyroid receptor interacting protein 12 (TRIP12) {Homo sapiens}; contains Pfam profiles PF00632: HECT-domain (ubiquitin-transferase), PF00514: Armadillo/beta-catenin-like repeat Length = 1502 Score = 34.3 bits (75), Expect = 0.063 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -2 Query: 399 HSLPLEXKRKLLQFTTGSDRVPVGGLCNLN 310 H E +R LQF TGS R+P GGL +L+ Sbjct: 1416 HEFDREQQRAFLQFVTGSPRLPHGGLASLS 1445 >At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiquitin-transferase family protein similar to SP|Q14669Thyroid receptor interacting protein 12 (TRIP12) {Homo sapiens}; contains Pfam profile PF00632: HECT-domain (ubiquitin-transferase) Length = 1794 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 393 LPLEXKRKLLQFTTGSDRVPVGGLCNLN 310 L + +R QF TG+ R+P GGL LN Sbjct: 1698 LTADQQRAFCQFVTGAPRLPPGGLAVLN 1725 Score = 27.1 bits (57), Expect = 9.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 250 NVLLLPEYDTRDKLQDRLLKAINYSKG 170 N L LP Y T++ + +LL AIN +G Sbjct: 1763 NYLKLPPYSTKEIMYKKLLYAINEGQG 1789 >At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiquitin-transferase family protein similar to SP|Q14669Thyroid receptor interacting protein 12 (TRIP12) {Homo sapiens}; contains Pfam profile PF00632: HECT-domain (ubiquitin-transferase) Length = 1888 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 393 LPLEXKRKLLQFTTGSDRVPVGGLCNLN 310 L + +R QF TG+ R+P GGL LN Sbjct: 1792 LTADQQRAFCQFVTGAPRLPPGGLAVLN 1819 Score = 27.1 bits (57), Expect = 9.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 250 NVLLLPEYDTRDKLQDRLLKAINYSKG 170 N L LP Y T++ + +LL AIN +G Sbjct: 1857 NYLKLPPYSTKEIMYKKLLYAINEGQG 1883 >At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiquitin-transferase family protein / IQ calmodulin-binding motif-containing protein contains Pfam profiles PF00632: HECT-domain (ubiquitin-transferase), PF00612: IQ calmodulin-binding motif Length = 1142 Score = 29.1 bits (62), Expect = 2.4 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = -1 Query: 487 DFHELEKSTEYDGAYASDSXMLQXFWGIV 401 D +L ++T+Y G Y+ S ++ FW ++ Sbjct: 1020 DVDDLRRNTKYTGGYSDSSRTIKIFWEVM 1048 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,594,598 Number of Sequences: 28952 Number of extensions: 176209 Number of successful extensions: 420 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 420 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1190791976 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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