Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0254.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.52 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   6.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 334 GGATHRPAHSGGGTPS---RTLARTSSPGA 254
           G   H P H+  G PS    T+A TS+PG+
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 173 TYQCCPEPYVDVTFTIQIRRR 193


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 241 TYQCCPEPYVDVTFTIQIRRR 261


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 TYICKPI*YYDRSFTLXIGQR 575
           TY C P  Y D +FT+ I +R
Sbjct: 241 TYQCCPEPYVDVTFTIQIRRR 261


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 253 RPRVSWSERGSARGCRRRCVQGGAWPRRQDQYAPLMQPEREGHSLLYV 396
           RPR S      A   R++ +    W  +   Y  L+ P R  +S++Y+
Sbjct: 49  RPRESAQTTSKAGIHRKKVLLLVWWDHKGIVYFELLPPNRTINSVVYI 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,205
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)