Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0253.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   3.4  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   6.0  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.0  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 238 MRKMYASCALLGLPRMEHRSGPPSAASTAMRPPK*GPVDTS 116
           +RK+         P M  R+  PSAAST   PP   P++ S
Sbjct: 834 IRKILKKREFAKKPTMTKRAIAPSAASTEKLPPVPSPLELS 874


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 177 PERCSIRGNPNSAQDAYILRI 239
           PERC+    P+S +D YIL I
Sbjct: 428 PERCTSSVPPSSYEDNYILEI 448


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 4   RRTRPRRPAVDWIENHHCAHKRIFSPSYPVLTPRERSGKCRRDLILAVA 150
           +RT PRR  VD + N  C   R F+ +Y V     R    R+ L++A A
Sbjct: 5   KRTFPRRAFVDLLLNRFCL--REFATTYSVSVSNARK-LVRKRLLIADA 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,405
Number of Sequences: 5004
Number of extensions: 49228
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)