Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0253.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical ...    29   4.2  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AC087081-8|AAY55899.1|  499|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.18 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 448 CVMRIETIQ-DISGARLR*INARSXCXRLRLIRAYYKETSCAMG*NRQVLLNDNVCSNGC 272
           C+ R   ++  I GA+ + IN    C   +  RA+ +    A G   ++ LND +   GC
Sbjct: 51  CLNRFNLLELHIDGAKFKYINVNGDCVVKKYDRAWMRLRRIAGGDYVEMALNDMI---GC 107

Query: 271 LVH 263
           L H
Sbjct: 108 LQH 110


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +2

Query: 224 IHFTHPSRRVRSDVNETTVATYVIVQENLPILTHSTRRFLVICTYKPETXTVR 382
           +HF HP  R  +      V  ++I    +P+   ++   L++C  +  +  +R
Sbjct: 206 VHFIHPKTRAANKYARYVVYIHMIFVVIIPMFLSTSLNILLVCALRKNSMPLR 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,794
Number of Sequences: 27780
Number of extensions: 293591
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)