Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0251.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     29   3.2  
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    28   7.5  
06_03_1308 - 29221583-29221630,29221709-29221786,29221908-292219...    28   9.9  
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211...    28   9.9  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    28   9.9  

>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 539 REASCVRERGTRWQHVGRGTPXAQDHQRQGTXRKEK-NIGAVPARGKSMGHGSVRLGAXA 715
           REA   +    RW+H+ R TP   D++     R  K N  AV   G      S   G   
Sbjct: 71  REACTTQVLAKRWRHLWRSTPLRLDYRSLPLRRHNKGNALAVAVAGVISAVLSAHPGPCR 130

Query: 716 CL 721
           CL
Sbjct: 131 CL 132


>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 157 PKNIRVGYLEGDDIVDINKADSSLP 231
           P+   VGY++GD  +D+ K D + P
Sbjct: 19  PREHAVGYVQGDSYLDLKKFDDTWP 43


>06_03_1308 -
           29221583-29221630,29221709-29221786,29221908-29221952,
           29222075-29222187,29222283-29222406
          Length = 135

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 408 TPPPVPMVFSKFSSTIIGPD--QPVRIR 485
           TPPP P  FS    T+ G D  Q VRI+
Sbjct: 25  TPPPQPETFSNIPQTLSGGDGKQQVRIK 52


>06_03_1114 +
           27719099-27719252,27719340-27719570,27720508-27721148,
           27721225-27722124
          Length = 641

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 530 VVGREASCVRERGTRWQHVGRGTPXAQDHQRQGTXRKEKNIGAVPARG--KSMG 685
           + G   +   E  +RW  +G   P ++DH   GT R+E  +    AR   K++G
Sbjct: 325 ICGFGGNTTEELCSRWIQLGAFYPFSRDHSAIGTVRRELYLWESVARSARKALG 378


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 530 VVGREASCVRERGTRWQHVGRGTPXAQDHQRQGTXRKEKNIGAVPARG--KSMG 685
           + G   +   E  +RW  +G   P ++DH   GT R+E  +    AR   K++G
Sbjct: 649 ICGFGGNTTEELCSRWIQLGAFYPFSRDHSAIGTVRRELYLWESVARSARKALG 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,805
Number of Sequences: 37544
Number of extensions: 386163
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)