Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0250.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    28   1.8  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    26   7.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   7.2  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 307 RHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDT 432
           + +   + S  +IS +L   GHGRH  +LP E + +L  E+T
Sbjct: 353 KEEFGDMVSDEEISKALAKYGHGRHGIVLP-ESAKQLELEET 393


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 292 RKRKLRHQLQHVCSWHDISDSL 357
           R+  L+  L+++CS HD++D L
Sbjct: 44  RQNLLKIDLKNICSLHDLTDQL 65


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 682 KGAFRFEXSQFFLGGTLFASLPWPLGQSFSRHRPPVAVLG 563
           KG      S  F+G TLFA+L     +    HR P+ V G
Sbjct: 366 KGLSNIISSFAFIGFTLFATLSSLFFKVLKIHRRPIIVFG 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,681
Number of Sequences: 5004
Number of extensions: 71568
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)