Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0250.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 33 0.26
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 1.4
05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634 31 1.4
07_01_0084 + 657846-658538,660652-661920 30 2.5
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 30 2.5
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 30 2.5
09_04_0549 + 18478475-18478664,18479381-18480648 29 3.2
09_04_0547 + 18467016-18467205,18467922-18469189 29 3.2
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 29 3.2
04_04_0439 - 25207950-25209629 29 3.2
12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417... 29 4.3
11_01_0260 - 1985258-1985794,1986874-1986990 29 4.3
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477 29 5.7
03_01_0080 - 640806-641146,642484-642700,642795-642952,644057-64... 29 5.7
05_03_0441 - 14037497-14038006,14038208-14038369 28 7.5
07_03_0570 - 19601264-19601779 28 9.9
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 290 IGSGNYDTNYNMFVPGTIFRIVFEIKDT 373
IGS NYDT+Y + VP RI+F++ T
Sbjct: 237 IGSSNYDTSYKIRVPSWTDRILFKVDHT 264
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 56 GRLRGY*--T*NAGFHRQHTGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCGSP 229
GR RGY + + + ++SW ++R R ++ + R P RSR R + P
Sbjct: 1223 GRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGP 1282
Query: 230 LRREVP 247
RR P
Sbjct: 1283 ARRPRP 1288
>05_04_0352 + 20533846-20534038,20534117-20534391,20535134-20535634
Length = 322
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 538 CSGLHHRSPFVREIKITMRDPLHVRPGHNVFGHVEWYLREEVRMKLP 398
C+GL P + E+ + DP H+ P ++G EWY K P
Sbjct: 40 CAGLPIAVPIIAEVDLYKFDPWHL-PRMALYGEKEWYFFSPRDRKYP 85
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 331 SWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIHCGLGGRGEDLALLF*FREQ 510
S+H I HGRH GEV+F+ P ++ Q+H +++ ++F
Sbjct: 110 SYHHIDHDGNPLPHGRHRVAASGEVAFDSP----SRPDQVHLSFADGVDEMRVMF----- 160
Query: 511 TVXGDEGR 534
V GD GR
Sbjct: 161 -VCGDGGR 167
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 93 FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQE--GEEPRDVVLHFDVRFHRD 254
FT +IP L VG + I G + ++L E G + +VLH+DVR D
Sbjct: 187 FTIDIPCGLIVGSSVTIIGTPGSLSGNFRIDLVGTELPGGSGKPIVLHYDVRLTSD 242
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 795 GPGLG*KHSGGSPLKKNRVPGPYPVGFLNPS 703
GP + GG P+ N PGP P G+++P+
Sbjct: 557 GPPMFPPAYGGQPMVYNAQPGPSPQGYMHPA 587
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 260 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 397
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 260 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 397
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 185 PLRSRRRGAEGCGSPLRREVPPGHIISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEI 364
P R R R + +P SL G +G+GNY + P + + +VF+
Sbjct: 242 PKRRRHRQQQPPSAPAPAASLSSSTASLPASPGRALGTGNYVVTVGLGTPASRYTVVFD- 300
Query: 365 KDTDVITIYCQ 397
+D + CQ
Sbjct: 301 TGSDTTWVQCQ 311
>04_04_0439 - 25207950-25209629
Length = 559
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 613 PLGQSFSRHRPPVAVLGDWGAEGAGCSGLHHRSPFVREIKITMRDPLH 470
PL Q+ +R+ P +L + A GAG L R RE+K+ ++ P H
Sbjct: 38 PLWQALNRNLP---LLTNGEAAGAGGDALPPRQEREREVKVQVQSPAH 82
>12_01_1053 -
10840558-10841085,10841363-10841528,10841571-10841787,
10842321-10842420
Length = 336
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 670 RFEXSQFFLGGTLFASLPWPLGQSFSRH--RP-PVAVLGDWGAEGAGCSGLHHRSPFVRE 500
RF+ S F F + +PL +S+ RH RP P +LG GL HR R
Sbjct: 158 RFDESNFLSSVRFFFNFEYPLLKSWLRHCRRPGPCRLLGPPQGRRLPERGLRHRPLHHRH 217
Query: 499 IKITMRDPL 473
+ R PL
Sbjct: 218 HHLLQRLPL 226
>11_01_0260 - 1985258-1985794,1986874-1986990
Length = 217
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 110 GITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCG 223
G+ K RQN++R + +G C+ ++ P+ + CG
Sbjct: 153 GLWKVGRQNKERGRGRGRCRGSLQPPVHVVGQQQSSCG 190
>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
Length = 486
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 209 AEGCGSPLRREVPP--GHIISLSRKNGIWIGSGNYDTNYNMF 328
A G+PLR +VPP ++ SL ++ I SG+Y+ ++ +F
Sbjct: 300 ARKSGTPLRPKVPPIETYLFSLLDEDQRSIASGSYERHHGIF 341
>03_01_0080 -
640806-641146,642484-642700,642795-642952,644057-645062
Length = 573
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 343 YRARNKHVVVG--VVISASDPNAVLPGQRYDVSRWNLTSKWRTTSLGSSPS 197
Y ++ +H+V ++ S+ + V P V W L+ RTT LG SP+
Sbjct: 290 YFSQKQHLVAVDLQMVKVSEEDGVEPCSSSHVLAWELSPSLRTTLLGPSPA 340
>05_03_0441 - 14037497-14038006,14038208-14038369
Length = 223
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 528 RPEHPAPSAPQSPRTATGGR*REKDCPKGQGRLAN 632
RP P P +S R ATGG E C G+ + N
Sbjct: 125 RPRRPPPRGSRSCRCATGGSAAEAVCSGGKVCMVN 159
>07_03_0570 - 19601264-19601779
Length = 171
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 777 KHSGGSPLKK-NRVPGPYPVGF 715
K SGGSP+KK + P P PV F
Sbjct: 34 KASGGSPVKKMSSAPSPAPVSF 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,790,994
Number of Sequences: 37544
Number of extensions: 561840
Number of successful extensions: 1733
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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